BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3559.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312937|ref|YP_003777029.1| respiratory nitrate reductase t...   388   e-109

>gi|300312937|ref|YP_003777029.1| respiratory nitrate reductase
           transmembrane subunit gamma [Herbaspirillum seropedicae
           SmR1]
          Length = 230

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/226 (91%), Positives = 213/226 (94%)

Query: 2   NYLHQFLYGIYPYIALVVFLLGSLVRFEREQYTWKSDSSQLLHAGRLRLGNLLFHVGVLG 61
            YLHQFLYGIYPYIAL VFLLGSLVRFEREQYTWKSDSSQLLHAGRLRLGN+LFHVGVLG
Sbjct: 5   TYLHQFLYGIYPYIALTVFLLGSLVRFEREQYTWKSDSSQLLHAGRLRLGNILFHVGVLG 64

Query: 62  LFFGHLVGLLTPVAVWDAIGVTHSFKQAVAMLAGGVFGTLCLLGLLILIHRRWTDARIAA 121
           LFFGHLVGLLTPV VWDA+GVTHSFKQ VAM AGG+FG+LCL GLLILIHRR TDARIAA
Sbjct: 65  LFFGHLVGLLTPVMVWDALGVTHSFKQLVAMAAGGLFGSLCLAGLLILIHRRLTDARIAA 124

Query: 122 VTRPSDKLLLLWLLVTLGLGLSTIAESAQHRDGHMMVLLMTWAQHIITLRGDAASFIEAA 181
           VTRP DKLLLLWLLVTL LGLSTIAESAQHRDGHMMVLLMTWAQHI+T RGDAASFI  A
Sbjct: 125 VTRPGDKLLLLWLLVTLALGLSTIAESAQHRDGHMMVLLMTWAQHIVTFRGDAASFIVGA 184

Query: 182 PLLFKLHLFMGLTLFVIFPFTRLVHVWSGFASVTYLGRAWQLVRPR 227
           PLLFKLHLFMGLTLFVIFPFTRLVHVWSGFA++ YLGRAWQLVRPR
Sbjct: 185 PLLFKLHLFMGLTLFVIFPFTRLVHVWSGFATLGYLGRAWQLVRPR 230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,292
Number of extensions: 15686
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)