BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3558.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312936|ref|YP_003777028.1| respiratory nitrate reductase [...   291   3e-80

>gi|300312936|ref|YP_003777028.1| respiratory nitrate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  291 bits (745), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/222 (75%), Positives = 186/222 (83%), Gaps = 5/222 (2%)

Query: 14  LYRILSALMSYPQADLIAALPEIGLAVQAEPTHRSALQPLLDHLAGTPLIDLQEAYVDTF 73
           +YRILSAL+SYPQ +LI ALPEI  A+QAEP H++ALQ LL+HL  TPL+ LQE+YVDTF
Sbjct: 5   IYRILSALLSYPQPELIDALPEISQALQAEPAHQAALQDLLEHLRQTPLLHLQESYVDTF 64

Query: 74  DRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRAHGMEPAANELPDYVPLFLEFLSLLEP 133
           DRSHALSLHLFEHIHGESRDRGQAMVDLLEEYR HG EP + EL DYVPLFLEFLSLLEP
Sbjct: 65  DRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELSDYVPLFLEFLSLLEP 124

Query: 134 AAAEKLLGEAIHVLAAIGLRLQKREHPYSSLFLLLTTLTEVEPREQDEPPVRDMDEAMEV 193
             A  LLGEAIHVLAA+G RLQ+R+  Y+S  LLLT  T++ PR+QDEPPVRDMDEAMEV
Sbjct: 125 DTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTDIAPRQQDEPPVRDMDEAMEV 184

Query: 194 FGPGADGVEPLLKPAMG-----GVQPLHFHPRPAARPASQSS 230
           FGPGADGVEPLL+PAM      GVQPLHFHPRPA   A Q+S
Sbjct: 185 FGPGADGVEPLLRPAMANMNMSGVQPLHFHPRPAEVRAGQTS 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 739,181
Number of extensions: 30134
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)