BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3557.p
         (517 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312935|ref|YP_003777027.1| respiratory nitrate reductase s...  1019   0.0  

>gi|300312935|ref|YP_003777027.1| respiratory nitrate reductase
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 517

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/517 (91%), Positives = 503/517 (97%)

Query: 1   MRIRAQVGMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGIGYPKQWENQK 60
           M+IRAQVGMVLNLDKCIGCHTCSV+CKNVWTSRDGVEYAWFNNVETKPGIGYPKQWENQ+
Sbjct: 1   MKIRAQVGMVLNLDKCIGCHTCSVSCKNVWTSRDGVEYAWFNNVETKPGIGYPKQWENQE 60

Query: 61  KWNGGWLRNASGKLEPKQGGRVRILTNLFANPNLPAIDDYYEPFTYDYEHLQKAPLMATP 120
           KW GGW R A GKLEP+QGG++RIL+NLFANPNLPAIDDYYEPFTYDYEHLQKAPLM TP
Sbjct: 61  KWQGGWQRTAEGKLEPRQGGKMRILSNLFANPNLPAIDDYYEPFTYDYEHLQKAPLMQTP 120

Query: 121 PTARPVSVLTGKKMDKITWGPNWEDDLGGEFSARSKDALFEGVQKEMHSTFESTFMMYLP 180
           PTARPVSVLTGKKMDKI+WGPNWEDDLGGEFSARS+D LFEGVQKEMHSTFESTFMMYLP
Sbjct: 121 PTARPVSVLTGKKMDKISWGPNWEDDLGGEFSARSQDVLFEGVQKEMHSTFESTFMMYLP 180

Query: 181 RLCEHCLNPACVASCPSGSIYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYYNWSSGKA 240
           RLCEHCLNPACVASCPSGS+YKREDDGIVLVDQDKCRGWRMCISGCPYKKIY+NWSSGKA
Sbjct: 181 RLCEHCLNPACVASCPSGSVYKREDDGIVLVDQDKCRGWRMCISGCPYKKIYFNWSSGKA 240

Query: 241 EKCTFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADKIEAAASVADEQNLYQAQLDCFL 300
           EKCT CYPR+EAGQPTVCSETCVGRIRYLGV+LYDAD+IEAAA+V +EQ+LY+AQL CFL
Sbjct: 241 EKCTLCYPRLEAGQPTVCSETCVGRIRYLGVMLYDADQIEAAAAVENEQDLYEAQLACFL 300

Query: 301 DPHDPAVIAEARRQGIAESWLESARRSPVYKMALQWKIAFPLHPEYRTLPMVWYVPPLSP 360
           DPHDPAVIAEARRQGIAESWLE+AR+SPVYKMA+QWKIAFPLHPEYRTLPMVWYVPPLSP
Sbjct: 301 DPHDPAVIAEARRQGIAESWLEAARKSPVYKMAMQWKIAFPLHPEYRTLPMVWYVPPLSP 360

Query: 361 IQKAAEAGHMGMTGIIPDVKSLRIPVRYLANLLTAGKEAPILSALERLLAMRAYKRAETV 420
           IQKAAEAG MGM G+IPDVKSLRIP+RYLANLLTAGKEAP+LSALERLLAMRAYKRAET+
Sbjct: 361 IQKAAEAGQMGMQGMIPDVKSLRIPLRYLANLLTAGKEAPVLSALERLLAMRAYKRAETI 420

Query: 421 HGQKDEAVLQQVGLTPAEVEDMYQTLAIANYEDRFVVPSSHKEMVEDSFNDKGSCGFTFG 480
           HGQ+DEA+LQQVGLT AEVEDMYQTLAIANYEDRFVVPSSHKEMVEDSFN+KGSCGF+FG
Sbjct: 421 HGQRDEALLQQVGLTAAEVEDMYQTLAIANYEDRFVVPSSHKEMVEDSFNEKGSCGFSFG 480

Query: 481 NGCSGGVSDGSLFGKKPQGSVIFVDMPKSRKKTALTE 517
           NGCSGG S+GSLFGKKPQGSVIFVDMPKSRKKT LTE
Sbjct: 481 NGCSGGASEGSLFGKKPQGSVIFVDMPKSRKKTPLTE 517


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,724,873
Number of extensions: 75393
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,198,455
Effective search space: 512938740
Effective search space used: 512938740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)