BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3556.p (1242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312934|ref|YP_003777026.1| respiratory nitrate reductase s... 2418 0.0 >gi|300312934|ref|YP_003777026.1| respiratory nitrate reductase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 1242 Score = 2418 bits (6267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1151/1242 (92%), Positives = 1201/1242 (96%) Query: 1 MSHFLDRLKFMSRVKSTFADGHGAVVNEDRQWENAYRSRWQHDKEVRSTHGVNCTGSCSW 60 MSHFLDRLKFMSRVKSTFA+GHGAVVNEDRQWENAYRSRWQHDK VRSTHGVNCTGSCSW Sbjct: 1 MSHFLDRLKFMSRVKSTFANGHGAVVNEDRQWENAYRSRWQHDKVVRSTHGVNCTGSCSW 60 Query: 61 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMIRGRLMQ 120 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMIRGRLM+ Sbjct: 61 KVYVKNGLITWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYVYSAQRVKYPMIRGRLMK 120 Query: 121 LWQEARRTLSPVEAWAAITSDAAKATSYKSVRGLGGFVRADWDTANEIIAAANAYTIKQY 180 LWQEAR+T+ PV+AWAAIT DAAKA YKSVRGLGGFVR DW+TANEIIAAANA+TIK+Y Sbjct: 121 LWQEARKTMEPVQAWAAITGDAAKAQHYKSVRGLGGFVRTDWETANEIIAAANAHTIKEY 180 Query: 181 GPDRVIGFSPIPAMSMVSYAAGARYLSLIGGVPLSFYDWYCDLPPASPQIWGEQTDVPES 240 GPDRV+GFSPIPAMSMVSYAAGARYLSLIGGVPLSFYDWYCDLPPASPQ+WGEQTDVPES Sbjct: 181 GPDRVVGFSPIPAMSMVSYAAGARYLSLIGGVPLSFYDWYCDLPPASPQVWGEQTDVPES 240 Query: 241 ADWYNSTYLMVWGSNVPQTRTPDAHFYTEVRYKGTKTVAVSSDFGEMVKFGDIWLAPKQG 300 ADWYN+ YLMVWGSNVP TRTPDAHFYTEVRYKGTKTVAVSSDFGEMVKFGDIWLAP+QG Sbjct: 241 ADWYNAGYLMVWGSNVPLTRTPDAHFYTEVRYKGTKTVAVSSDFGEMVKFGDIWLAPRQG 300 Query: 301 TDAALAMAMGHVVLKEFHQAQPSAYFRSYVKQYTDMPMLVRLVQRDGHYLPDHLLRASQL 360 TDAALAMAMGHVVLKEFH +PS YFRSYVKQYTD+PMLVRLV+RDG YLP+HLLRASQL Sbjct: 301 TDAALAMAMGHVVLKEFHLERPSPYFRSYVKQYTDLPMLVRLVERDGRYLPEHLLRASQL 360 Query: 361 PDQLEEANNADWKSLAIDASTGQIVAPNGSIGYRWGEGQVNDGAKVGRWNLESRDGHSGR 420 P QLEEANNADWK+LAIDA+TG+IVAPNGSIGYRWGEGQVNDGAKVGRWNLESRDGHSGR Sbjct: 361 PGQLEEANNADWKTLAIDAATGEIVAPNGSIGYRWGEGQVNDGAKVGRWNLESRDGHSGR 420 Query: 421 EIDPLLSLVAQHDEVVTVAFNYFGGDDAQPLALRQVPVRHVRLADGSTALVATVHDLMMA 480 EIDPLLSLV HDEVV V+FNYFGGDDA+ L R+VPVRHVRLA+GSTA VATVHDLMMA Sbjct: 421 EIDPLLSLVEAHDEVVAVSFNYFGGDDAEQLLERRVPVRHVRLANGSTARVATVHDLMMA 480 Query: 481 NYGVDQGLGGEIARSYDDDVPYTPAWQEKHTGVKRELVIQVAREFAQNAHDTQGKSMVIV 540 NYGVDQGLGG++ RSYDDD+PYTPAWQEKHTGVKRELVIQVAREFAQNAHDT+G+SMVI+ Sbjct: 481 NYGVDQGLGGDVPRSYDDDLPYTPAWQEKHTGVKRELVIQVAREFAQNAHDTEGRSMVIL 540 Query: 541 GAALNHWYHNDMIYRGIINLLMMCGCIGKSGGGWAHYVGQEKLRPQFGWAPLAFATDWVR 600 GAALNHWYHNDMIYRGIINLLMMCGCIGKSGGGWAHYVGQEKLRPQFGWAPLAFATDWVR Sbjct: 541 GAALNHWYHNDMIYRGIINLLMMCGCIGKSGGGWAHYVGQEKLRPQFGWAPLAFATDWVR 600 Query: 601 PPRQMNGTSFFYAHTSQWRHEKLGIDEIVAPTADKDKLSSMSMIDMNAKSERMGWLPSAP 660 PPRQMN TSFFYAHTSQWRHEKLG+DEIVAPTAD DKL++MSMIDMNAKSERMGWLPSAP Sbjct: 601 PPRQMNSTSFFYAHTSQWRHEKLGLDEIVAPTADHDKLAAMSMIDMNAKSERMGWLPSAP 660 Query: 661 QLETNPLDICDNARAMGQTPQDYLKEALKSGTVNMSCDDPDNPKNFPRNMFVWRSNILGS 720 QLETNPLD+CD A+A GQ+PQDYLK ALKSG VNMSCDDPDNPKNFPRNMFVWRSNILGS Sbjct: 661 QLETNPLDVCDAAQAAGQSPQDYLKAALKSGAVNMSCDDPDNPKNFPRNMFVWRSNILGS 720 Query: 721 SGKGHEYFLKYLLGTQNALFDNPDEAIKPSEVKYREQAAEGKLDLLVTLDFRMSTTCLYA 780 SGKGHEYFLKYLLGTQNALFD+ EAI+PSEVKYREQAAEGKLDLLVTLDFRMSTTCLYA Sbjct: 721 SGKGHEYFLKYLLGTQNALFDDAAEAIRPSEVKYREQAAEGKLDLLVTLDFRMSTTCLYA 780 Query: 781 DIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLWESKTDWEIYKGIAKKFSEIGGDYLG 840 DIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLW+SKTDWEIYK +AKKFSEIGG++LG Sbjct: 781 DIVLPTATWYEKDDLNTSDMHPFIHPLSEAVQPLWDSKTDWEIYKALAKKFSEIGGEHLG 840 Query: 841 TRSDIVLQPLMHDTPAELGQPFEPKDWKKGECDLIPGKTAPNFVVVERNYKDIYKKFTSI 900 TRSDIVLQPLMHDTPAELGQPFEPKDWKKGECDLIPGKTAPNFVVVERNY+DIYKKFTS+ Sbjct: 841 TRSDIVLQPLMHDTPAELGQPFEPKDWKKGECDLIPGKTAPNFVVVERNYRDIYKKFTSV 900 Query: 901 GPLLDKLGNGGKGINWQTGHEVGELAALNKRVTEPGVSQGRPRLDSAIDACEMILSFAPE 960 GPLLDKLGNGGKGINW T HEVGELA LNKRVTE GVSQGRPRLD+AIDACEMIL+FAPE Sbjct: 901 GPLLDKLGNGGKGINWNTEHEVGELAGLNKRVTEAGVSQGRPRLDTAIDACEMILTFAPE 960 Query: 961 TNGHVAVKAWEALGKITGRDHTHLAVGREHDKIRFRDVQAQPRKIISAPTWSGLESEEVS 1020 TNGHV+VKAWEALGKITGRDHTHLAVGREHDKIR RDVQAQPRKIISAPTWSGLESEEVS Sbjct: 961 TNGHVSVKAWEALGKITGRDHTHLAVGREHDKIRLRDVQAQPRKIISAPTWSGLESEEVS 1020 Query: 1021 YNAGYTNVHELIPWRTLTGRQQFYQDHRWMLDFGEGLCVYKPAVDTKTVAPMLNRQPNGE 1080 YNAGYTNVHE IPWRTLTGRQQFYQDHRWMLDFGEGLCVYKPA+DTKTVAPMLNR PNGE Sbjct: 1021 YNAGYTNVHEYIPWRTLTGRQQFYQDHRWMLDFGEGLCVYKPAIDTKTVAPMLNRHPNGE 1080 Query: 1081 KEIVLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDDAKAAGLVDNDWVEVFNSN 1140 KEIVLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDDA+ AGLVDNDWVEVFNSN Sbjct: 1081 KEIVLNFLTPHQKWGIHSTYSDNLRMLTLSRGGPHVWISEDDARRAGLVDNDWVEVFNSN 1140 Query: 1141 GTLTARVVVSQRIPGGMCLMYHAQEKIVNTPGAQLSGKRGGIHNSVTRAVLKPTHMIGGY 1200 GTLTARVVVSQRIPGGMCLMYHAQEKIVNTPGAQLSG+RGGIHNSVTRAVLKPTHMIGGY Sbjct: 1141 GTLTARVVVSQRIPGGMCLMYHAQEKIVNTPGAQLSGQRGGIHNSVTRAVLKPTHMIGGY 1200 Query: 1201 AQLSYGFNYYGTVGSNRDEFIVLRKMNKVDWLDGRKQERTAS 1242 AQLSYGFNYYGTVGSNRDEFIVLRKMNKVDWL G +ERTAS Sbjct: 1201 AQLSYGFNYYGTVGSNRDEFIVLRKMNKVDWLQGSLEERTAS 1242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,317,870 Number of extensions: 193216 Number of successful extensions: 469 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 469 Number of HSP's successfully gapped: 1 Length of query: 1242 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1146 Effective length of database: 1,165,310 Effective search space: 1335445260 Effective search space used: 1335445260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)