BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3555.p
         (462 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312933|ref|YP_003777025.1| nitrite/nitrate transporter pro...   810   0.0  
gi|300312932|ref|YP_003777024.1| nitrite/nitrate transporter pro...   104   2e-23

>gi|300312933|ref|YP_003777025.1| nitrite/nitrate transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/462 (91%), Positives = 443/462 (95%), Gaps = 2/462 (0%)

Query: 1   MNHVLQRWEPENPEFWHQQGQAVARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS 60
           MNHVLQRWEPENP+FWH+QG+ +ARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS
Sbjct: 1   MNHVLQRWEPENPDFWHKQGEQIARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS 60

Query: 61  KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDPSTSY 120
           KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDP+T Y
Sbjct: 61  KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDPTTRY 120

Query: 121 STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTPMVIS 180
           STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTP+VI+
Sbjct: 121 STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTPLVIA 180

Query: 181 SAVFAVSISGQGFLFHDPKSGVESTFWLANAGFIWVPFIIAATLAAWFGMNDIASAQASL 240
           SA+F  ++SGQGFLFHDPKSG+ES+FWLANAGFIWVPFIIAAT+AAWFGMNDIASA ASL
Sbjct: 181 SAMFGSAVSGQGFLFHDPKSGLESSFWLANAGFIWVPFIIAATVAAWFGMNDIASAHASL 240

Query: 241 ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA 300
           ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA
Sbjct: 241 ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA 300

Query: 301 RPLGGMLSDRIGGARLTLWVFLAMGLAILLGILPALHTHQFTLFLASFIIMFILTGLGNG 360
           RPLGGM+SDR+GGAR+T WVFLAMGL ILLGILPALHTHQF LFLASFI MFILTGLGNG
Sbjct: 301 RPLGGMISDRVGGARVTFWVFLAMGLIILLGILPALHTHQFMLFLASFIGMFILTGLGNG 360

Query: 361 STFCMIPLIFQTERERAAQRQGGGEAALQQARLDAAKESAAVLGFSGAIGAYGGFFIPQS 420
           STFCMIP+IFQTERERA Q Q  GEAA QQARLDA KESAAVLGFSGAIGAYGGFFIPQS
Sbjct: 361 STFCMIPVIFQTERERAVQGQ--GEAAQQQARLDAGKESAAVLGFSGAIGAYGGFFIPQS 418

Query: 421 FGTSIRMTGAPDMAMFIFVGFYASCMLITWWYYARRGAEMPC 462
           FGTSI+MTGAPDMAM++F+ FYASCM ITWWYYARR A MPC
Sbjct: 419 FGTSIKMTGAPDMAMYVFIAFYASCMAITWWYYARRNAPMPC 460


>gi|300312932|ref|YP_003777024.1| nitrite/nitrate transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 180/435 (41%), Gaps = 59/435 (13%)

Query: 37  LAFAVWMLWSVVAANLDKAGFHFSKDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTA 96
           + F +WM++ V+   +  A  H ++ +   LTA+P L+G+ +R+        +GGR    
Sbjct: 20  VCFTIWMMFGVIGIPIKNA-LHLNETEFGLLTAMPVLTGSLIRVPLGIWTDRYGGRIVFF 78

Query: 97  ISTASLLIPAIGMGLALQDPSTSYSTLLGLALLCGLGGGNFSSSMANISFFFPKARKGYA 156
           +   S +IP     + L   + ++   L L L  GL GG+FS     ++ +F K R+G A
Sbjct: 79  LLMLSTVIP-----IWLISYAHAFWHFLVLGLFVGLAGGSFSVGTPYVARWFKKERQGLA 133

Query: 157 TGMNAGIGNLGVSVVQFVTPMVISSAVFAVSISGQGFLFHDPKSGVESTFWLANAGFIWV 216
            G+  G GN G +V +F+ P++I+SA + +           P+              ++ 
Sbjct: 134 MGV-FGAGNSGAAVNKFIAPVLIASAGWTLV----------PQ--------------VYA 168

Query: 217 PFIIAATLAAWFGMNDIASAQAS----LADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAA 272
             ++AA L  W G     S Q S      DQ  + +    W  C  Y   FG ++G S  
Sbjct: 169 GLMLAAALIFWLGSATDPSHQVSSDTRFMDQVRMLRDPRVWRYCQYYSVVFGGYVGLSLW 228

Query: 273 FAMLIKAEFPEIAVAQYAFLG---PLAGALARPLGGMLSDRIGGARLTLWVFLAMGLAIL 329
                  E+    +   A L     L G + R LGG LSDR G  ++T WV     +A  
Sbjct: 229 MVKYYVTEY-GFDIRHAALLAACFSLPGGVLRALGGWLSDRFGAYQVTWWVMWVCWVAFF 287

Query: 330 LGILPALHTHQFTLFLASFIIMFILTGLGNGSTFC--MIPLIFQTERERAAQRQGGGEAA 387
           L   P                 F++  +G    F   + P++F             G+A+
Sbjct: 288 LLSYPQTD--------------FVIQTVGGPQAFHIGLNPVLFTILLFVVGVAMAIGKAS 333

Query: 388 L-QQARLDAAKESAAVLGFSGAIGAYGGFFIPQSFGTSIRMTGAPDMAMFIFVGFYASCM 446
           + +    D +    AV G  G  G  GGF +P  FG ++ +TG       +  G    C+
Sbjct: 334 VFKFISDDYSSNIGAVSGIVGLAGGLGGFILPILFGLALDLTGVRSSCFMLLYG--TVCI 391

Query: 447 LITWWYYARRGAEMP 461
            + W ++  R  E P
Sbjct: 392 SLVWMHFQFR-REYP 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,191,647
Number of extensions: 40765
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 373
Effective length of database: 1,198,455
Effective search space: 447023715
Effective search space used: 447023715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)