BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3543.p
         (429 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312918|ref|YP_003777010.1| xanthine/uracil permease [Herba...   785   0.0  

>gi|300312918|ref|YP_003777010.1| xanthine/uracil permease
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/429 (96%), Positives = 423/429 (98%)

Query: 1   MSGSYFPQWRLRQSTNDGQGAVIAADERLPAPQTVAMGVQHVVAMFGSTVLAPLLMGFDP 60
           MSGSYFPQWRLRQSTNDGQGAVIAADERLPAPQT+AMGVQHVVAMFGSTVLAPLLMGFDP
Sbjct: 1   MSGSYFPQWRLRQSTNDGQGAVIAADERLPAPQTLAMGVQHVVAMFGSTVLAPLLMGFDP 60

Query: 61  NLAILMSGVGTLLFFLMVGGRVPSYLGSSFSFIGLVIAVTGYAGSGPNANLGVALGGIIA 120
           NLAILMSGVGTLLFFL+VGGRVPSYLGSSFSFIGLVIAVTGYAGSGPN NLGVALGGIIA
Sbjct: 61  NLAILMSGVGTLLFFLLVGGRVPSYLGSSFSFIGLVIAVTGYAGSGPNTNLGVALGGIIA 120

Query: 121 CGALYAVLGLIVSGVGTRWIESLMPPVVTGAVVAVIGLNLAPIAVKGVSGSSFDSWMALA 180
           CGA+YAV+GLIV+GVGTRWIESLMPPVVTGAVVAVIGLNLAPIAVKGVSGSSFDSWMALA
Sbjct: 121 CGAVYAVIGLIVAGVGTRWIESLMPPVVTGAVVAVIGLNLAPIAVKGVSGSSFDSWMALA 180

Query: 181 TILCVGFVAVFTRGMLQRLLILIGLLLAYALYAVLANGLGLGKPIDFAGVANAAWFGVPH 240
           TILCVG VAVFTRGMLQRLLIL+GLLLAY LYAVL NGLGLGKPIDF+ VANAAWFGVPH
Sbjct: 181 TILCVGGVAVFTRGMLQRLLILVGLLLAYVLYAVLTNGLGLGKPIDFSTVANAAWFGVPH 240

Query: 241 FATPVFHAGAMALLAPVAIILVAENLGHIKAVSAMTGQNLDRYIGRAFIGDGLATMLSGS 300
           FA PVFHAGAMALLAPVAIILVAENLGHIKAVSAMTGQNLDRYIGRAF+GDGLATMLSGS
Sbjct: 241 FAAPVFHAGAMALLAPVAIILVAENLGHIKAVSAMTGQNLDRYIGRAFVGDGLATMLSGS 300

Query: 301 VGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIAILLGFSPKFGAVILTIPGAVLGGVSI 360
           VGGTGVTTYAENIGVMAVT+IYSTLVFVVAAVIAILLGFSPKFGAVILTIPGAVLGGVSI
Sbjct: 301 VGGTGVTTYAENIGVMAVTKIYSTLVFVVAAVIAILLGFSPKFGAVILTIPGAVLGGVSI 360

Query: 361 VVFGLITVSGARIWVENKVDFSNNTNLIVAAVTLVLGAGDFTLKMGGFALGGIGTATFGA 420
           VVFGLIT+SGARIWVENKVDFSNNTNLIVAAVTLVLGAGDFTLK+GGFALGGIGTATFGA
Sbjct: 361 VVFGLITISGARIWVENKVDFSNNTNLIVAAVTLVLGAGDFTLKLGGFALGGIGTATFGA 420

Query: 421 IILHALLKR 429
           IILHALLKR
Sbjct: 421 IILHALLKR 429


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,165,453
Number of extensions: 47453
Number of successful extensions: 305
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,203,190
Effective search space: 410287790
Effective search space used: 410287790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)