BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3535.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester phosp...   388   e-109

>gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/245 (84%), Positives = 219/245 (89%)

Query: 1   MWPYPPILAHRGGGTLAPENTLAAFRTGLEHGYRAVEFDVMLTRDEVPILMHDPQRGRTL 60
           MWPYP ILAHRGGGTLAPENTLA FR GL++GYRAVEFDVMLTRDEVPILMHDP+RGRTL
Sbjct: 1   MWPYPKILAHRGGGTLAPENTLAGFRAGLQYGYRAVEFDVMLTRDEVPILMHDPERGRTL 60

Query: 61  PGAGKIAETDWAELRELEAGAWLDARFAGERICTLEQGLDFCLAHGIWMNVEIKPAAPQY 120
           PG+GKIAETDWA LREL+AG W D  FAGER+CTLEQ LDFC  HGIWMNVEIKPA P  
Sbjct: 61  PGSGKIAETDWAVLRELDAGTWRDPVFAGERLCTLEQALDFCQEHGIWMNVEIKPATPAA 120

Query: 121 ARRTAELTAQAVARRFEGKSGSALPVLSSFSFEALLAAKEAAPALPRGYLVDVMTEDWQA 180
           ARRTAELTAQAVARRF   +G+ALPVLSSFSFEALLA +E AP LPRG+LV+V+ +DWQA
Sbjct: 121 ARRTAELTAQAVARRFARDAGAALPVLSSFSFEALLAVQETAPQLPRGFLVEVIPDDWQA 180

Query: 181 RLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNEVARAEEIRLWGVDAFCTDRID 240
           RLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNE ARA EI  WGVDAFCTDRID
Sbjct: 181 RLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNETARAAEITAWGVDAFCTDRID 240

Query: 241 LIAAD 245
           LI AD
Sbjct: 241 LIPAD 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,624
Number of extensions: 28491
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)