BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3534.p
         (874 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbasp...  1772   0.0  

>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score = 1772 bits (4589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 861/874 (98%), Positives = 869/874 (99%)

Query: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60
           MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA
Sbjct: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120
           ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120

Query: 121 ADKLWATVYQTDDEAYDIWTKEIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180
           ADKLWATVYQTDDEAYDIWTK+IGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 181 IFYDHGPDIWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240
           IFYDHGPD+WGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV 300
           GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV 300

Query: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFYKLVKDLVVQMGAAYPELPEAAERVEMV 360
           IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFF+KLVKDLVVQMGAAYPELPEAAERVEMV
Sbjct: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVEMV 360

Query: 361 LKQEEERFGETLEHGMKILEAALAAHTGKLDGETAFTLYDTYGFPLDLTADICRERKVEL 420
           LKQEEERFGETLEHGMKILEAALAA+TGKLDGETAFTLYDTYGFPLDLTADICRER VEL
Sbjct: 361 LKQEEERFGETLEHGMKILEAALAANTGKLDGETAFTLYDTYGFPLDLTADICRERNVEL 420

Query: 421 DEAGFNAAMERQKTAARAAGKFKMAAAIEYTGDKTRFVGYESLAKSAKVVALYVAGSPVQ 480
           DEAGF AAMERQK+AARAAGKFKMAAAIEYTGDKTRFVGYESLA+SAKVVALYVAGSPVQ
Sbjct: 421 DEAGFTAAMERQKSAARAAGKFKMAAAIEYTGDKTRFVGYESLAQSAKVVALYVAGSPVQ 480

Query: 481 KIEAGQDAIVVLDTTPFYAESGGQAGDAGALEAANALFAVADTQKIQAEVFGHHGQLIKG 540
           KIEAGQDAIVVLDTTPFYAESGGQ GDAGALEAAN LFAVADTQKIQAEVFGHHGQLIKG
Sbjct: 481 KIEAGQDAIVVLDTTPFYAESGGQCGDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKG 540

Query: 541 SLAIGDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH 600
           SLA+GDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH
Sbjct: 541 SLAVGDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH 600

Query: 601 NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT 660
           NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT
Sbjct: 601 NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT 660

Query: 661 STELCGGTHVARTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSTRVAEAAAAL 720
           STELCGGTHV RTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLS+RVAEAAAAL
Sbjct: 661 STELCGGTHVTRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAAL 720

Query: 721 KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA 780
           KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA
Sbjct: 721 KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA 780

Query: 781 DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG 840
           DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG
Sbjct: 781 DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG 840

Query: 841 KGGGRPDMAQAGGTEPAALPGALQGVAGWVQSKL 874
           KGGGRPDMAQAGGTEPAALPGALQGVAGWVQSKL
Sbjct: 841 KGGGRPDMAQAGGTEPAALPGALQGVAGWVQSKL 874


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,556,535
Number of extensions: 104660
Number of successful extensions: 406
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 1
Length of query: 874
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 780
Effective length of database: 1,174,780
Effective search space: 916328400
Effective search space used: 916328400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)