BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3533.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312907|ref|YP_003776999.1| ADP-ribose pyrophosphatase [Her...   355   1e-99

>gi|300312907|ref|YP_003776999.1| ADP-ribose pyrophosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  355 bits (911), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 171/184 (92%), Positives = 176/184 (95%)

Query: 1   MNQFKFCPVCAASLVLRADEGEAGKVRLACPDGHWTHWDNPLPVLAALVEIDGKMLTARN 60
           M+QFKFCPVCAASL LRADEGEAGKVRLACPDGHWTHWDNPLPVLAALVEIDGKMLTARN
Sbjct: 1   MSQFKFCPVCAASLELRADEGEAGKVRLACPDGHWTHWDNPLPVLAALVEIDGKMLTARN 60

Query: 61  AAWAEGRFALITGFMERDETPEQGIARELKEETDLDAQHIELIGVYEFMRKNELIIAYYV 120
           AAWAEGRFALITGFMERDETPEQGIARELKEETDLDAQ IELIGVYEFMRKNELIIAYYV
Sbjct: 61  AAWAEGRFALITGFMERDETPEQGIARELKEETDLDAQEIELIGVYEFMRKNELIIAYYV 120

Query: 121 KATGSIRLSPELVEYRLSDPADLRPWPAGTGHAVADWMRQRNLPVQYVEFAGSSTPITMP 180
           KA+GSIRLSPELVEYRL++ ADLRPWPAGTGHAVADWMR+R L VQYVEFAGSSTPI  P
Sbjct: 121 KASGSIRLSPELVEYRLTEAADLRPWPAGTGHAVADWMRRRGLDVQYVEFAGSSTPIATP 180

Query: 181 QVQK 184
           QV K
Sbjct: 181 QVLK 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 634,544
Number of extensions: 27343
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)