BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3531.p
         (531 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspiril...  1031   0.0  
gi|300313212|ref|YP_003777304.1| glutamate synthase large subuni...   129   4e-31

>gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 531

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/531 (93%), Positives = 514/531 (96%)

Query: 1   MWANRYFVFWAVVALTLALLALSAAHLLDWGWVLIPLALTAIGIHDLVQQRHAVLRNYPL 60
           MWANRY  FWA + LT  LLAL+A+H L WGW LIPLALTA+G+HDL+Q+RHAVLRNYP+
Sbjct: 1   MWANRYLAFWAALVLTAILLALAASHQLGWGWGLIPLALTAVGLHDLLQKRHAVLRNYPI 60

Query: 61  IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKAEVDSRPFGTEIDMQQAG 120
           IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRS+VYQRAKAEVDSRPFGTE+DMQQAG
Sbjct: 61  IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSIVYQRAKAEVDSRPFGTELDMQQAG 120

Query: 121 HEWIGHSLSPTKIASHDFRVTVGADRAQPYSMSVFNVSAMSFGALSANAIRALNQGAKKG 180
           HEWIGHSLSPTKIASHDFRV VGADRAQPYSMSVFNVSAMSFG+LSANAIRALNQGAKKG
Sbjct: 121 HEWIGHSLSPTKIASHDFRVIVGADRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180

Query: 181 NFAHDTGEGSVSAYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTTQAQSPQIKMIEVK 240
           NFAHDTGEGSVS YHREFGGDLVWQIASGYFGCRNADGSFN+EKFT QAQSPQIKMIEVK
Sbjct: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNDEKFTAQAQSPQIKMIEVK 240

Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGLLEFIEKLRSLS 300
           LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGLLEFIEKLR LS
Sbjct: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGLLEFIEKLRGLS 300

Query: 301 AGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360
            GKPVGIKLCVGHPWEFF IAKAMLKT IVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE
Sbjct: 301 GGKPVGIKLCVGHPWEFFGIAKAMLKTDIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360

Query: 361 GLVMVHNTLVGIGLRDKVKIGASGKIVTAFDVARTLALGADWCNSARGFMFALGCIQSQS 420
           GLVMVHNTLVGIGLRDKVKIGASGKI+TAFDVARTLALGADWCNSARGFMFALGCIQSQS
Sbjct: 361 GLVMVHNTLVGIGLRDKVKIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420

Query: 421 CHTDRCPTGVATQNANRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480
           CHTDRCPTGVATQNA+RARALVVPDKAERV+RFHQSTLHALQELVQAAGLPHTSALRPHH
Sbjct: 421 CHTDRCPTGVATQNADRARALVVPDKAERVFRFHQSTLHALQELVQAAGLPHTSALRPHH 480

Query: 481 IVRRITDHEIQLMSNVLKYLQPNDLIDGNYRYRVYEKFWPIARAESFHPEF 531
           IVRRI DHEIQLMSNVLKYLQPNDL+DGNYRYRVYEKFWPIARAESFHPEF
Sbjct: 481 IVRRINDHEIQLMSNVLKYLQPNDLLDGNYRYRVYEKFWPIARAESFHPEF 531


>gi|300313212|ref|YP_003777304.1| glutamate synthase large subunit
            oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 1558

 Score =  129 bits (325), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 144/330 (43%), Gaps = 56/330 (16%)

Query: 142  VGADRAQPYSMSV--FNVSAMSFGALSANAIRALNQGAKKGNFAHDTGEG--SVSAYHRE 197
            +  D  +P    V  F   AMS G++S  A   L     +     +TGEG   V+ Y  E
Sbjct: 865  ISIDEVEPAKEIVKRFATGAMSLGSISTEAHATLAIAMNRIGGKSNTGEGGEDVNRYRNE 924

Query: 198  FGG-------------------------------DLVWQIASGYFGCRNADGSFNEEKFT 226
              G                                 + Q+ASG FG        + E   
Sbjct: 925  LKGIPIKQGATLASEIGKEHIEVDIPLLEGDSLRSRIKQVASGRFGV-------SAEYLI 977

Query: 227  TQAQSPQIKMIEVKLSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTP 286
            +  Q      I++K++QGAKPG GG LP  K++  IA  R    GV  ISP  H    + 
Sbjct: 978  SADQ------IQIKMAQGAKPGEGGQLPGHKVSEYIAKLRVSVPGVGLISPPPHHDIYSI 1031

Query: 287  IGLLEFIEKLRSLSAGKPVGIKLC--VGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTG 344
              L + I  L++++    + +KL   VG       +AKA        D + + G +GGTG
Sbjct: 1032 EDLAQLIHDLKNVNPRASISVKLVSEVGVGTVAAGVAKAK------SDHVVIAGHDGGTG 1085

Query: 345  AAPLEFVDHVGMPLQEGLVMVHNTLVGIGLRDKVKIGASGKIVTAFDVARTLALGADWCN 404
            A+PL  + H G P + GL     TLV  GLR+++++ A G++ T  DV     LGAD   
Sbjct: 1086 ASPLSSIKHAGSPWELGLAETQQTLVLNGLRNRIRVQADGQMKTGRDVVIGAMLGADEFG 1145

Query: 405  SARGFMFALGCIQSQSCHTDRCPTGVATQN 434
             A   +   GCI  + CH + CP GVATQ+
Sbjct: 1146 FATAPLVVEGCIMMRKCHLNTCPVGVATQD 1175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,680,965
Number of extensions: 72682
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,193,720
Effective search space: 526430520
Effective search space used: 526430520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)