BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3518.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310262|ref|YP_003774354.1| aldoxime dehydratase [Herbaspir...   337   9e-94

>gi|300310262|ref|YP_003774354.1| aldoxime dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  337 bits (864), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 165/350 (47%), Positives = 223/350 (63%), Gaps = 5/350 (1%)

Query: 1   MESAIPSHLQCPRTQTSRVDASYTPPYPCWTARADQSVSQVVMGYFGVQSSGPENHGRAC 60
           MESAI  HL+CPRT + RVD  Y PP+P W  RAD +++QV M Y G+Q    E   +A 
Sbjct: 1   MESAIDQHLKCPRTLSRRVDDDYQPPFPMWVGRADATLTQVTMAYLGIQFK-EEKRAQAL 59

Query: 61  RALMGIVAGLKGADGAGHIDLTHYVDAQGYDNMIAIAYWDCPRAFTRWRDSEAIATWWND 120
           +A+  IV+     DG G+ D+++++D QGY N I + YW     + RW  S  +A WW+ 
Sbjct: 60  QAMRHIVSSFALPDGPGNHDMSYHLDNQGYGNFIVVGYWRDAGRYCRWMRSPDVAGWWDS 119

Query: 121 PQRLQDGLGYFREILSPRIQHLETMFNTPDHPEGVGVVMGGLSEPFREHGYWGSMRERIP 180
             RL DGLGYFRE+ SPR +  ET++   +   GVG VM  +S+   EHGYWGSMR+R P
Sbjct: 120 DARLADGLGYFREVFSPRAEQFETLYAFKEDLPGVGAVMDRISDDIEEHGYWGSMRDRFP 179

Query: 181 LAQTDPLTPSGQL-VRHTDALQTGRIHLAGHDNLAVIRSGQEWTSTRGLERELYQRDMEP 239
            +Q D + PSGQL V   +  + GR+ L GHDN+A+IRSGQ+W      ER LY  +M P
Sbjct: 180 ASQVDRMRPSGQLEVLSGEPAKGGRVLLKGHDNIALIRSGQDWVDADPEERALYFNEMLP 239

Query: 240 VLARGMDFLRDQGQSIGCYSNRYMRHVSSDGRPQEKSFGLSYWRSLADMERWSESHSTHV 299
            L  GMDFLRDQG+ IGCYSNR++R+V  +G   + ++ + +WRSL  +ERW+ESH TH+
Sbjct: 240 PLQDGMDFLRDQGKEIGCYSNRFVRNVDLEGNLLDIAYDIGHWRSLDLLERWAESHPTHL 299

Query: 300 EIFGTFMRMVQALEFKLALAVYHEVTILKPDEQDYEYINCHAATGLLATA 349
            IF TF ++V  L+    L +YHEV++     Q  EYINCH  TG+L  A
Sbjct: 300 RIFTTFFKVVTGLK---KLRLYHEVSVSDGATQWLEYINCHPQTGMLRDA 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,187,028
Number of extensions: 52797
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)