BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3517.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol dehydr...   222   3e-59
gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol dehydr...   214   9e-57

>gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  222 bits (565), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 172/293 (58%), Gaps = 2/293 (0%)

Query: 2   SLRKTIIAGTTLLAGLAVIRPASALEVTAGDYEAFPAGSDIAMLYYQWVERSQTYSHGNQ 61
           SLR  + +    LA + V+  A A++V   DY   PAG+   +LY Q  ER  +YS GN+
Sbjct: 13  SLRTVLFSIAVALA-MGVMADACAIDVDPADYVPAPAGTTAGLLYQQHAERDASYSSGNR 71

Query: 62  IPGNTGLSSNVALARYIHVVKLSDNAVLDPQFILPFGHLSTSGELSALGNASGTGDLILG 121
            PGN  L+S+V + R +H + +    V  PQ +LPF  L +  ++ ALG+ +  GDLIL 
Sbjct: 72  NPGNPLLTSDVTILRLVHYMNIGGYTV-GPQVLLPFASLRSGRDIKALGSENALGDLILA 130

Query: 122 APVKFILNQSTHDVFAIGPYVYLPTGQYDSNKFINLGENRWKGLLQLAYIRHFNPQWALD 181
           APV  + + +    FA+ PY+YLPTG Y  ++ +N+GENRWK  LQ   ++  +    LD
Sbjct: 131 APVWLVNDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLVQRISGPLYLD 190

Query: 182 LVGDATVFGENTDYTPAHAALKQATRYELQAHLRYNISPATSLSVGVGNVRGGETELNGV 241
           L GD  VFG+N DY     +++QA  Y+LQ++LRY  S  T+ + G+    GGET +NGV
Sbjct: 191 LTGDVMVFGKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNATAGLSRTWGGETRVNGV 250

Query: 242 KQGDRLDTTYARLTVTSFVAPTVQLQMQYGRDLSVENGLKEKNRVNFRIVKLF 294
              D+ +        ++FVA   Q+    GRDLSV+NG KE  R+N R++++F
Sbjct: 251 DNHDQPNQLKISFGGSTFVAAKTQIMGSIGRDLSVDNGFKENFRLNLRLLQIF 303


>gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  214 bits (544), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 161/280 (57%), Gaps = 3/280 (1%)

Query: 17  LAVIRP--ASALEVTAGDYEAFPAGSDIAMLYYQWVERSQTYSHGNQIPGNTGLSSNVAL 74
           L V+ P  A A++V  GD+   P G+ + +LYYQ  ER   Y+ G +   N  L S++ +
Sbjct: 38  LVVMFPVAAHAIDVDIGDFVPAPGGTTVGLLYYQHAERDSLYTKGQKAALNPRLVSDIGI 97

Query: 75  ARYIHVVKLSDNAVLDPQFILPFGHLSTSGELSALGNASGTGDLILGAPVKFILNQSTHD 134
           AR +H   +   A   PQ +LPFG L    + + LG  SG GD+IL AP   + + ++  
Sbjct: 98  ARLVHYTSIGGLA-FAPQVLLPFGRLDAGRDTAPLGQTSGVGDIILAAPFWPLNDAASRT 156

Query: 135 VFAIGPYVYLPTGQYDSNKFINLGENRWKGLLQLAYIRHFNPQWALDLVGDATVFGENTD 194
              I PY+YLPTG YD N+ +NLGE+RWK  LQ+ +++ F  +W LDL GD   +G+N D
Sbjct: 157 YLGIAPYLYLPTGSYDRNRALNLGEHRWKFDLQVGFVKGFTEKWYLDLTGDVMFYGKNND 216

Query: 195 YTPAHAALKQATRYELQAHLRYNISPATSLSVGVGNVRGGETELNGVKQGDRLDTTYARL 254
           Y    A  +Q + ++ QA+LRY  +P  ++ VG+    GGET ++GV   D      A +
Sbjct: 217 YGSNGATQRQKSLFQGQAYLRYQFTPVANIFVGLSQNWGGETRVDGVASNDEARQRKASI 276

Query: 255 TVTSFVAPTVQLQMQYGRDLSVENGLKEKNRVNFRIVKLF 294
             + F+ P  QL    GRDL V+NG KE  R+N R++++F
Sbjct: 277 GGSWFIGPKTQLLGAIGRDLYVQNGFKENARINLRLLRVF 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 966,741
Number of extensions: 42331
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)