BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3506.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589...   176   6e-46

>gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  176 bits (445), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 108/123 (87%)

Query: 1   VINVALLGTTRRWYIRDHLSIREIAGRLDISRNTVHRYIRSDAIEPAYPTRRSPSSLNEF 60
           +I+VALLG  RRWYIRD +SIREIA RLDISRNTV R IR++AIEP+YP+R+S SSL+EF
Sbjct: 1   MIDVALLGIIRRWYIRDRISIREIARRLDISRNTVRRSIRTEAIEPSYPSRKSSSSLDEF 60

Query: 61  APRLPAWLSSESVKYRKQRRTLKQMFLDLKELGYEGSYDRVVAFARRSKVGHMERGKSAS 120
           AP+L AWLS+E+VK RKQRRTLKQMFLDLKELGY+GSYDRV AF RR KVG MER  SAS
Sbjct: 61  APQLTAWLSAEAVKSRKQRRTLKQMFLDLKELGYKGSYDRVAAFGRRWKVGQMERVNSAS 120

Query: 121 KST 123
           KST
Sbjct: 121 KST 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 351,611
Number of extensions: 11923
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)