BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3502.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase [Herba...   101   8e-23
gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...    86   3e-18

>gi|300309407|ref|YP_003773499.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 10/202 (4%)

Query: 108 SLLTGLRTGAAGAVSVKALARKNAKTVTSIGTGNQARMQIRAICEVMQIETIHAWDQYPE 167
           +L T LRT A   ++ + +AR +++ +  IG G Q+  QI A    M IE +  +D  P 
Sbjct: 106 TLTTALRTAATSVLAARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLYDTDPA 165

Query: 168 ALSQYRIDIEREFGIPVVVAHSKKAAVQMADILVTTT--RGKGSLVEAAWVKSGTHIVAI 225
           A ++   ++    G+ ++   S   AV+ ADI+ T T  + +  ++  A +++G H+ A+
Sbjct: 166 ATARLMRNLRACSGLQLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGMHLNAV 225

Query: 226 GTDTYGKQEFEPEIFRGAKIVNDSIAQCIEKGETWH-PLNQNIIRREDIHAELGEILLGK 284
           G D  GK E   ++ + A++V +   Q   +GE    P +  +        EL ++L G 
Sbjct: 226 GGDCPGKTELHADVLKAARVVVEFAPQSRIEGEVQQMPADFPV-------TELWQVLAGH 278

Query: 285 KPGRETEDEITIFDSTGMAIQD 306
            PGR +  E+T+FDS G A++D
Sbjct: 279 APGRSSAAEVTVFDSVGFALED 300


>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 91  ILLFDARTCALICVMDGSLLTGLRTGAAGAVSVKALARKNAKTVTSIGTGNQARMQIRAI 150
           I LF   T A +C M+G  +TGLRT AA AV+  ALAR +A  +  IGTG QAR  I A+
Sbjct: 77  IQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVLAVIGTGVQARSHIPAL 136

Query: 151 CEVMQI-ETIHAWDQYPEALSQYRIDIEREFGIPVVVAHSKKAAVQMADILVTTTRGKGS 209
            +V    E + A     +AL++   ++ R  G+P  +    +AA Q AD+LVT TR    
Sbjct: 137 LQVRPFKEVLIAGRSGQQALAE---EVTRTLGVPARMVSIDEAAAQ-ADVLVTVTRSATP 192

Query: 210 LVEAAWVKSGTHIVAIGTDTYGKQEF-EPEIFRGAKIVNDSIAQCIEKGETWHPLNQNII 268
           L +   ++ G  + A+G      +E  +  I R A +  +   Q  ++          + 
Sbjct: 193 LFDGELLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQEAGDLVQCAPGVF 252

Query: 269 RREDIHAELGEILLGKKPGRETEDEITIFDSTGMAIQDNTTAAKIYRNAIAN 320
               +  EL + + G  P +   D+I I+   G+ ++D   A   YR A A 
Sbjct: 253 DWAQVM-ELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAGLAYRKACAR 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,476
Number of extensions: 40015
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)