BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3498.p (442 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [H... 350 1e-97 gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [H... 84 2e-17 gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H... 57 3e-09 >gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 441 Score = 350 bits (899), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/409 (43%), Positives = 250/409 (61%), Gaps = 1/409 (0%) Query: 33 YELARRGISVAILEKGIVGGEQSGRNWGWVRQQNRDLFELPLAMRSLRRWNELRDEIQID 92 Y LA+RGISVA++EKG +G EQS RNWGW RQQNRD ELP+A +S+ W + E D Sbjct: 34 YFLAKRGISVAVVEKGRIGAEQSSRNWGWCRQQNRDARELPMATKSIDLWEQFSAETGED 93 Query: 93 LGFRREGILYATNEEKDLAKWSAWGQRAKEVGFVSHLLSASEVKARTPSGGPGYKGGVWS 152 GF R G+LY +N+E+++A+W+AWG AK G +++L + + R + G +KGGV+S Sbjct: 94 TGFNRCGLLYLSNDEEEIARWAAWGDFAKTAGVTTYMLDSKQAAERGHATGRAWKGGVFS 153 Query: 153 PTDGRAEPSRAAPALAEGAKRLGAHLYQQCAVRGLETSGGRLSGVWTERGLIKAATVVCA 212 PTDG A+P +AAPA+A +LG H+ QQCA RG++T GGR+SGV TE G+IK V A Sbjct: 154 PTDGTADPGKAAPAVARAIMKLGGHVIQQCAARGIDTEGGRVSGVITEAGVIKTKVAVMA 213 Query: 213 GGAWSGRLCRRHGIAFPVVNVVGTTMRTSVAPEVVSGCFSGPGFALRRRLDGAYSVAVPG 272 GGAW+ C + GI FP +V + M + + G G A+ RR DG+Y++A+ G Sbjct: 214 GGAWASSFCHQLGIRFPQASVRQSIMSVAPMEAPLPGALYTSGVAVTRRSDGSYALAISG 273 Query: 273 FGRIDLAPVGLKNGLQYYRNYKNDIGKKLTYRLSRAWMEGPEATSTWAFDQVSPFERCRV 332 R+D L+ Q+ + + L+ AW G E S W D +P ER R+ Sbjct: 274 RARVDPTMQFLRFSPQFLPMFAKRW-RSLSPGGLEAWRSGHETLSRWRMDAPTPMERMRI 332 Query: 333 LDPRPDADFARRALDNVKRAIPQLSELRVAYAWAGAIDTTPDLIPVISDVAALPGLYLAT 392 LD D R +PQL++ +V + WAG +D+TPD +P I ++ PGL LA Sbjct: 333 LDASADPASIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLILAA 392 Query: 393 GFSGHGFALGPAAGELVADMVTGASPMIDVSPYRLSRFNDGTSLKVPEM 441 GFSGHGF +GP AG L+AD+ +GA+P++D PY +RF+D + KV + Sbjct: 393 GFSGHGFGIGPGAGHLIADLASGAAPIVDPRPYHPNRFSDSSWGKVADF 441 >gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 430 Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 123/434 (28%), Positives = 170/434 (39%), Gaps = 80/434 (18%) Query: 7 VYDSP--EFVSEVDVVVIGAGIVGTSIGYELARRGISVAILEKG-IVGGEQSGRNWGWVR 63 +Y SP + ++VDV ++G G G S LARRG SV +LE G V E SGRN G V Sbjct: 13 LYISPTRDLPAQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPHVAAEASGRNGGHVN 72 Query: 64 Q-QNRDLFEL--PLAMRSLRRWNELRD-----------EIQIDLGFRREGILYATNE--E 107 D EL + + R W D E QID F R G L + Sbjct: 73 NGLAVDYAELAAKVGVERARAWYHAYDDAVDTVARLVQEEQIDCDFLRHGKLKMATRPYQ 132 Query: 108 KDLAKWSAWGQRAKEVGFVSHLLSASEVKARTPSGGPGYKGGVWSPTDGRAEPSRAAPAL 167 D + SA A V +L A V+A S + GG+ G+ R A L Sbjct: 133 MDALQRSADRLIADGVDLDVEILDAQRVQAEVQS--ERFHGGLLYKRSGQMHMGRFAYGL 190 Query: 168 AEGAKRLGAHLYQQCAVRGLE----TSGGRLSGVWTERGLIKAATVVCAGGAWSGRLCRR 223 A A+R GA ++ VR LE T G RL T RG + A V+ A GA R Sbjct: 191 AMAAERQGAAIHTGTEVRRLERIGQTHGHRLH---TTRGAVLARQVLLATGA------SR 241 Query: 224 HGIAFPVVNVVGTTMRTSVAPEVVSGCFSGPGFALRRRL--DGAYSVAVPGFGRIDLAPV 281 HG G F LRRR+ G++ V G A + Sbjct: 242 HG---------------------AYGSFGW----LRRRIVPIGSFIVVTEPLGAQRAATL 276 Query: 282 GLKNGLQYYRNYKNDIGKKLTYRLSRAWMEGPEATSTWAFDQVSPFERCRVLDPRPDADF 341 L++ R Y +R++ P+ + R + P+ DA Sbjct: 277 -----LKHQRTYTTVANIHHYFRMT------PDTRLVFG-----GRARFAISSPQSDAAS 320 Query: 342 ARRALDNVKRAIPQLSELRVAYAWAGAIDTTPDLIPVISDVAALPGLYLATGFSGHGFAL 401 + PQL ++R+ Y W G +D T D +P GLY + G+SGHG + Sbjct: 321 GEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLP---QAGERDGLYYSMGYSGHGTQM 377 Query: 402 GPAAGELVADMVTG 415 G+ +A ++ G Sbjct: 378 SVHMGQCMAKVMAG 391 >gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 425 Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 26/228 (11%) Query: 10 SPEFVSEV--------DVVVIGAGIVGTSIGYELARRGISVAILEKGIVGGEQSGRNWGW 61 SP FVS+ DVVV+G GI G++ LAR+G V + E IVGG SGRN G Sbjct: 12 SPAFVSQTQTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVGGAASGRNGGM 71 Query: 62 VRQ---QNRDLFELPL----AMRSLRRWNELRDEIQ-------IDLGFRREGILYATNEE 107 Q+ L A R R ++ D ++ ID F R G L + Sbjct: 72 CNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFARHGKLKLAAKP 131 Query: 108 KDLAKWSAWGQ-RAKEVGFVSHLLSASEVKARTPSGGPGYKGGVWSPTDGRAEPSRAAPA 166 + + K + + A+ V + LLS +++ R G Y GG+ R Sbjct: 132 EHVDKLARSQELLARHVDGDTRLLSRAQL--RDELGSDRYHGGLLMHKSAGMHVGRYVRG 189 Query: 167 LAEGAKRLGAHLYQQCAVRGLETSGGRLSGVWTERGLIKAATVVCAGG 214 LA+ A+R GA ++ V G+E GR + V T G++ A V+ A G Sbjct: 190 LAQAAQRRGALYLERTPVLGIEAKNGRYA-VRTSAGVLHAGQVLLASG 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,546,260 Number of extensions: 70837 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 4 Length of query: 442 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 354 Effective length of database: 1,203,190 Effective search space: 425929260 Effective search space used: 425929260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)