BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3497.p (597 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 867 0.0 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 456 e-129 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 434 e-123 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 423 e-119 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 252 7e-68 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/596 (73%), Positives = 514/596 (86%) Query: 1 MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVA 60 ML+S+RARVICA + LV+ SV++STAANYLIAR + ATD+ L+T+++ HA VIGDW+A Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120 K++++ SL+D+ LT PDAMLKQIQVAGGF+DVGVGYPDK+ KFTDWPNIPATYDPTTR Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKGAVEAGKPAAIPYISTSKALLVALAIPVMREGKLKAVLVGDVALDSVVETIKAIHP 180 PWYKG ++AGKP A+PY+STS LLVALA PVMR+G LKAV+VGDVALDSVVE IK+IHP Sbjct: 121 PWYKGVLQAGKPVALPYVSTSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 Query: 181 TPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRAKL 240 TP SFGML+++ GRIIAHP+A+LRFKQA+++APEF+ L+ A P+ IVVDGR KL Sbjct: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL 240 Query: 241 VRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRRLG 300 VR Q + GTDW+IV+AID+ EA AG R+LL +SLLSL+ +V AS+IG AVTATAFRRLG Sbjct: 241 VRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLG 300 Query: 301 QVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMAS 360 Q+S AM AIGSGSGDLTQRLPD G+DEVA+I++SFN FV +LQ+VM DIRDA E VR+AS Sbjct: 301 QISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVAS 360 Query: 361 NEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGG 420 +EIA AN DLS RTESAAASLEQTAASMAEIS TV RS AA +ADQRSS+AT IASQGG Sbjct: 361 DEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGG 420 Query: 421 KVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH 480 KVVSDAV T+GEIEKVS+QIG II+VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVVAH Sbjct: 421 KVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAH 480 Query: 481 EVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIAR 540 EVR+LA+RSA AAREVK+LVE T+SRV+AGS QVRQAG TM +IVT + DVQS I+ IAR Sbjct: 481 EVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADIAR 540 Query: 541 ATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 T EQ RGIQEVN+AVIQLD MVQQNAALVE+SAAAS+TLQ QAN LA+TI RFRI Sbjct: 541 TTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/607 (44%), Positives = 403/607 (66%), Gaps = 20/607 (3%) Query: 1 MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVA 60 M SI+AR++ + L++ S+ V ++ I + A + + + + I +WVA Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120 +T + + D VL P ++K +Q +GGF+ +G DK + +PA YDPT R Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKGAVEAGKPAAI-PYIST-SKALLVALAIPVMREGKLKAVLVGDVALDSVVETIKAI 178 PWYK AV AGKP PY +K +V+ PVM+ G+ V+ + LD V + +++I Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 179 HPTPESFGMLIDKNGRIIAHPNAELRFKQATD----IAPEFAQLSS-AADDKASAPMKIV 233 HPTP SF L+D++G ++AHP+ + K A + + PE +L++ AADDKAS +++ Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPE--RLNALAADDKAS---EVM 235 Query: 234 VDGRAKLVRAQKIRGTDWSIVIAIDESEAMAG----ARSLLNTSLLSLILIVGIASVIGV 289 ++G AKLV+ I+GT+W++++A+D+++ AG +RS L +L ++ GI S+I Sbjct: 236 LEGAAKLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITT 295 Query: 290 AVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDI 349 AV F+RL +V +AM + SG+GDLT RL + G DEV ISRSFN FV Q+ ++ D+ Sbjct: 296 AV----FQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDV 351 Query: 350 RDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRS 409 R +S+ V+++S EIAT NQDLS RTE A +LE+TA++M E++ TV +++ A++A++ + Sbjct: 352 RRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELA 411 Query: 410 SSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAG 469 +A++IA+QGG+VV + V+T+ I S QI IITVIDGIAFQTNILALNAAVEAARAG Sbjct: 412 GNASKIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAG 471 Query: 470 EQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSA 529 EQGRGFAVVA EVRSLA+RSA+AA+E+K L++++VS+V+ G V V QAG TM +IV Sbjct: 472 EQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIR 531 Query: 530 DVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLAS 589 DV ++S IA A+ EQ GIQEVN A+ +D QQNAALVEQ+AAA+ +LQ +A+ L+ Sbjct: 532 DVSVIVSEIAHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSV 591 Query: 590 TIGRFRI 596 +G F++ Sbjct: 592 LVGGFKM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 434 bits (1117), Expect = e-123, Method: Compositional matrix adjust. Identities = 273/599 (45%), Positives = 377/599 (62%), Gaps = 9/599 (1%) Query: 1 MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVA 60 ML+S+RAR+I V +V ++++ +AAN R+ +A + HA I +WV Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120 K + +++ + ++ Q AG F D +GYPDK+ P +PA YDPT R Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRM-LALHP-MPAGYDPTAR 118 Query: 121 PWYKGAVEAGKPA-AIPYI-STSKALLVALAIPVMREGKLKAVLVGDVALDSVVETIKAI 178 PWYK AVEAGKP PY+ +T+ L+V A PV + L+AVL DV LD+VV T+ I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 179 HPTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRA 238 PTP SF ++ K+G II HPN EL K + + + S A + + + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSLAGMKQGGSA---TIGGIR 235 Query: 239 KLVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTAT-AFR 297 L+ Q I TDWS+V+A+D EA +L+ S + +L + +AS I ++ T T R Sbjct: 236 YLLFTQPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAI-VASAILLSYTITRLLR 294 Query: 298 RLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVR 357 RLG V AM I SG GDLT+RL GKDE+A ISR+FN F ++ +LDIR ASE+V+ Sbjct: 295 RLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVK 354 Query: 358 MASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIAS 417 ++S+EIA+ N DLS RTE A SLE+TA++M E++ TV ++ A+QA+Q + SA+++A Sbjct: 355 VSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAV 414 Query: 418 QGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 477 GG+VV V T+ I + S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 415 HGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 474 Query: 478 VAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISG 537 VA EVRSLA+RSA AA+E+K L++ +V +V GS V QAG+TM E+V+ V ++ Sbjct: 475 VASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGE 534 Query: 538 IARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 I+ A+ EQ GI EV AV Q+D QQNAALVEQ+AAA+ +LQ QA LA+ + F++ Sbjct: 535 ISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust. Identities = 252/597 (42%), Positives = 361/597 (60%), Gaps = 3/597 (0%) Query: 3 TSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVAEK 62 TS+R R+I +VV +++ N+L AR+ D ++ A I +W K Sbjct: 23 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82 Query: 63 TRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTRPW 122 +V S+++ P +K Q AGGF +GY DK F+ + YDPT RPW Sbjct: 83 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142 Query: 123 YKGAVEAGKPA-AIPYISTSKA-LLVALAIPVMREGKLKAVLVGDVALDSVVETIKAIHP 180 Y+ A + +P PY S S LLV A V ++G++ AV DV LD+VV + AI P Sbjct: 143 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 202 Query: 181 TPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRAKL 240 TP S+ L D +G+IIAHPN +LR K D+ + + + +DGR ++ Sbjct: 203 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 262 Query: 241 VRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRRLG 300 + ++ GTDW +V+A+D ++A+A ++L +S + +L+ +A+++ A+ + RL Sbjct: 263 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 322 Query: 301 QVSQAMAAIGSGSGDLTQRLPDQGK-DEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMA 359 V A+ I G GDLT+RL G+ DE+ I +FN+FV ++++VM+DIRDAS + A Sbjct: 323 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 382 Query: 360 SNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQG 419 S +IA+ N DLS RTES A+SLEQTAA+M +++ +V + A QA+Q S SA++IA+QG Sbjct: 383 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 442 Query: 420 GKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 479 G +V V T+ I S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 443 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 Query: 480 HEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIA 539 EVRSLA+RSA AA+E+K L+ +V +V AG V QAG T+ +V V +++ I Sbjct: 503 SEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEIT 562 Query: 540 RATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 A+ EQ +GI + N AV +D QQNAALVEQ+AA + +LQ QA LA + FR+ Sbjct: 563 AASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 252 bits (643), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 157/319 (49%), Positives = 222/319 (69%), Gaps = 8/319 (2%) Query: 281 VGIASVIGVAVTATAFRRLG---QVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQ 337 V IAS++ V R L Q++Q +A GDLT R+ G+DE + + Sbjct: 201 VLIASLLAFLVATNVSRPLKEAVQIAQRVA-----RGDLTLRIRPAGRDETGALMEALRA 255 Query: 338 FVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSR 397 L++++ ++R ++ + AS+EIA N DLS RTE A SLE+TA++M E++ TV++ Sbjct: 256 MNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTVTQ 315 Query: 398 STAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNIL 457 + A+QA+Q +++A++IASQGG+VV V T+ I + S +I II+VIDGIAFQTNIL Sbjct: 316 NADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNIL 375 Query: 458 ALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQA 517 ALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA+E+KEL++ +V +VSAGS V +A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERA 435 Query: 518 GTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAAS 577 G+TM E+V V +++ I+ AT EQ GI EVN A+ Q+D QQNAALVEQ+AAA+ Sbjct: 436 GSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAA 495 Query: 578 ATLQAQANTLASTIGRFRI 596 +L+ QA+ LA+ +G+F++ Sbjct: 496 DSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,357,041 Number of extensions: 49609 Number of successful extensions: 530 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 72 Length of query: 597 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 506 Effective length of database: 1,188,985 Effective search space: 601626410 Effective search space used: 601626410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)