BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3488.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312877|ref|YP_003776969.1| transmembrane transglycosylase,...   538   e-154

>gi|300312877|ref|YP_003776969.1| transmembrane transglycosylase,
           SLT family protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  538 bits (1386), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/335 (87%), Positives = 308/335 (91%), Gaps = 8/335 (2%)

Query: 1   MSNQASEAPLSGAPQMVRRVNFRNLSGNPRIAQFFGIAHRLLTMAGIAALFVLGLMFFNP 60
           MSNQA+EAPLSG  QM++RV+ RNLSGN RIA+FFGIAHRLLT+ GIAALFVLGLMFFNP
Sbjct: 1   MSNQATEAPLSGTSQMLQRVSLRNLSGNARIARFFGIAHRLLTILGIAALFVLGLMFFNP 60

Query: 61  DLADRLISMSPFSDAPEEVQEADAPATPALADLMAPTTPVASVNALAGAAVAGSVQSAVA 120
           DLADRLISMSPFS   +EVQEADAP+TP LADLMAPT PVA+V+A+AGAA A +VQ+A  
Sbjct: 61  DLADRLISMSPFST--DEVQEADAPSTPVLADLMAPTAPVATVSAMAGAAAATAVQTA-- 116

Query: 121 TQPQHQTQALTPEERQLLGNPRQQKLVTNWLAKRYRVASDAADMLVSAAYLTARDIKLDP 180
                  Q LTPE+RQLLG PRQQKLVTNWLAKRYRVA+DAADMLVSAAYLTARDIKLDP
Sbjct: 117 ---PMAAQELTPEQRQLLGTPRQQKLVTNWLAKRYRVATDAADMLVSAAYLTARDIKLDP 173

Query: 181 LLILSVIAIESRFNPFAESPMGAQGLMQVMAKVHHDKFQELGGIKAALNPVANIRVGSQI 240
           LLILSVIAIESRFNPFAESPMGAQGLMQVMAKVHHDKFQELGGIKAALNPVANIRVGSQI
Sbjct: 174 LLILSVIAIESRFNPFAESPMGAQGLMQVMAKVHHDKFQELGGIKAALNPVANIRVGSQI 233

Query: 241 LKEYVTRGGSVEAGLKSYVGAADMSNDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKL 300
           LKEYVTRGGSVEAGLKSYVGAADM+NDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKL
Sbjct: 234 LKEYVTRGGSVEAGLKSYVGAADMANDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKL 293

Query: 301 PAASGVSASAEQPKPASNNVAAAAKPKTEEQLAAL 335
           P   GVSASAEQPKPASNNVAAAAKPK EEQLAAL
Sbjct: 294 P-TPGVSASAEQPKPASNNVAAAAKPKAEEQLAAL 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,606
Number of extensions: 34239
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)