BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3485.p (603 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 986 0.0 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 253 3e-68 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 201 2e-52 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 178 1e-45 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 70 3e-13 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/603 (79%), Positives = 526/603 (87%) Query: 1 MRQQANASLILLQKALALHQKGDLAPAEELYKKVLAKLPKHFEANYLYGMLKLHQEDWEA 60 MRQQANA+ ILLQKALALHQKG LAPAEELYKKVL KLP+HFEANYLYGMLKLHQEDWE Sbjct: 1 MRQQANANQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWET 60 Query: 61 AEAQLAHAIELNPDHPDTYFDHAGALVHLGRDDEAVQRYDQILTHNPAFTDALLARGAAL 120 AEAQLA AIELNPDH DTYFDHAGAL HLGRDDEAV RYD +LT N F +ALLARGAAL Sbjct: 61 AEAQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAAL 120 Query: 121 RRLKRSREALADFERAVALAPDNADAWFQLGNSQHEHYGYRDARASYERAVALRPDFIEA 180 RRL R+REALAD ERA ALAPDNADAWFQ GN H+ Y Y DAR SYERAVALRPDFIEA Sbjct: 121 RRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA 180 Query: 181 WFNLGNTCKDSYQFEEALRAYDRAIQEQPDFFEAQSNRGYVLFKMQRPMEALEAYDRALA 240 WFNLGNTCKD Q ++ALRAYDRA++ QPDFFEA SNRGYVLFKMQRP EAL+AYDRALA Sbjct: 181 WFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALA 240 Query: 241 LDDSSPDLWFNRGSTLEQLYRFNEATECYRRARELKPDANSATWNDALLKLRQGDFANGW 300 LD+ +PDLWFNRGSTLEQLYRF EA+E YRRA+ LKPDA SATWN+AL++LRQGDF NGW Sbjct: 241 LDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGW 300 Query: 301 KAFESRWATEQMRAQVRHFLQPLWLGEQSLQGKTILIHAEQGFGDTLQFVRYLPRVAALG 360 K FE+RWATEQMR Q R F+QPLWLGEQ L+GKTIL+HAEQGFGDTLQFVRY P +AA G Sbjct: 301 KGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARG 360 Query: 361 ARVILEVPPALLRLLAKVPGAAEVISSEQFLRPGFDYHCPLMSLPLACQSLSEADIPRAP 420 ARVILEV PAL R LA +PG +VI ++ F+RP FD+HCPLMSLPLAC++ SEADIPRAP Sbjct: 361 ARVILEVQPALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP 420 Query: 421 YLLPEADAWAGWLQRLPHNRALRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELA 480 YLLPEA +WA W QRLP NRALRVGLVWAGSSAQTHP+AVRID +RSLPFA LAP+VELA Sbjct: 421 YLLPEASSWAAWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELA 480 Query: 481 REHSRLEFYSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLVANLDLLISVDTSV 540 REH+ LEFYS+Q+G+ AVAQL AHPL++ VRDCSPELHDFA+T L+ANLDLLI+VDTSV Sbjct: 481 REHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSV 540 Query: 541 CHLAGALGKPVWLLNRVNTCWRWQLERSDTPWYPSFTIFRQTQATDWSEVIAQVRAALQQ 600 CHLAGALG+PVWLLNR N CWRWQ+ER D+PWY TIF Q A W EVIA+VRAALQQ Sbjct: 541 CHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQ 600 Query: 601 QLA 603 QLA Sbjct: 601 QLA 603 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 253 bits (646), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 200/645 (31%), Positives = 299/645 (46%), Gaps = 63/645 (9%) Query: 9 LILLQKALALHQKGDLAPAEELYKKVLAKLPKHFEANYLYGMLKLHQEDWEAAEAQLAHA 68 L+ ++KAL L A+ L VL++ P AN+ G++ +H+ + AEA L A Sbjct: 25 LLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFANHARGLVAMHEGKFADAEAYLRKA 84 Query: 69 IELNPDHPDTYFDHAGALVHLGRDDEAVQRYDQILTHNPAFTDALLARGAALRRLKRSRE 128 IE +P++ + + AG ++ R DEA+ Y+ + + + + AL Sbjct: 85 IEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLANALHEKNDPEA 144 Query: 129 ALADFERAVALAPDNADAWFQLGNSQHEHYGYRDARASYERAVALRPDFIEAWFNLGNTC 188 ++A FE AV P+ LG + E Y +A A +++ L+ F + LG Sbjct: 145 SVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAF 204 Query: 189 KDSYQFEEALRAYDRAIQEQPDFFEAQSNRGYVLFKMQRPMEALEAYDRALALDDSSPDL 248 ++EA+ ++ AI P A + K+ R EA E R + + P+ Sbjct: 205 HAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNA 264 Query: 249 WFNRGSTL--------EQLYRFNEATEC---------------------------YRRAR 273 + GS+ + + FN+A E +R+A Sbjct: 265 YVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKAL 324 Query: 274 ELKPDANSATWNDALLKLRQGDFANGWKAFESRWATEQMRAQVRHFLQ------PLWLGE 327 EL+P+ +A N AL L QG GW+ ESR T + R+ V + P W G+ Sbjct: 325 ELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRE-RSHVYRLIHKLFDLIPKWDGK 383 Query: 328 QSLQGKTILIHAEQGFGDTLQFVRYLPRVAALGARVILEVPPALLRLLAKVPGAAEVISS 387 SL GK IL+ EQGFGD++QF+RY+ V GARV L V L RL ++ Sbjct: 384 SSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRE 443 Query: 388 EQFLRPGFDYHCPLMSLPLACQSLSEADIPRAPYLLPEAD-----AWAGWLQRLPHN-RA 441 L P D LMSLP A + + DIP P AD +W +++L + Sbjct: 444 SDPL-PPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQSPEK 502 Query: 442 LRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELAREHSRLEFYSVQMGEAAVAQL 501 LRVG+VW G+ + D RS+ A + +L +EFYS+Q G+ A Sbjct: 503 LRVGVVWGGNPEHGN------DRHRSIAMDKFATLFQL----PNIEFYSLQKGKPLDA-F 551 Query: 502 RAHPLSAHVRDCSPELHDFADTSGLVANLDLLISVDTSVCHLAGALGKPVWLLNRVNTCW 561 +A P + + + DFADT+ +ANLDL++SVDTSV HLAGALG P W+L W Sbjct: 552 KALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDW 611 Query: 562 RWQLERSDTPWYPSFTIFRQTQATDWSEVIAQVR---AALQQQLA 603 RW +R D+PWYP +FRQ +DW V+ +V ALQQ+ A Sbjct: 612 RWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKA 656 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 194/607 (31%), Positives = 281/607 (46%), Gaps = 71/607 (11%) Query: 12 LQKALALHQKGDLAPAEELYKKVLAKLPKHFEANYLYGMLKLHQEDWEAAEAQLAHAIEL 71 L+ AL+ + D A A+ L +L P+ +A +L G + Q + A A+ L Sbjct: 7 LKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL 66 Query: 72 NPDHPDT------YFDHAGALVHLGRDDEAVQRYDQILTHNPAFTDALLARGAALRRL-- 123 P PD+ + A GR ++A Y +++ + +A AAL+ + Sbjct: 67 LP--PDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMSP 124 Query: 124 --KRSREALADFERAVALAPDNADAWFQLGNSQHEHYGYRDARASYERAVALRPDFIEAW 181 K +ALA E A+ P AD W + + AR +A+ L + W Sbjct: 125 SGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYW 184 Query: 182 FNLGNTCKDSYQFEEALRAYDRAIQEQPDFFEAQSNRGYVLFKMQRPMEALEAYDRALAL 241 G QFEEALR Y D+AL L Sbjct: 185 LAAGLVEHAQGQFEEALRYY----------------------------------DQALIL 210 Query: 242 DDSSPDLWFNRGSTLEQLYRFNEATECYRRARELKPDANSATWNDALLKLRQGDFANGWK 301 D +RG+TL +L + EA + YRRA + A N AL L G W Sbjct: 211 APELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWP 270 Query: 302 AFESRWATEQMRAQVRHFLQPLWLGEQSLQGKTILIHAEQGFGDTLQFVRYLPRVAALGA 361 +E RW RH P W G SL GK IL+ AEQG GDT+QF RY+ + GA Sbjct: 271 LYEWRWEGRSADP-YRHATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGA 329 Query: 362 RVILEVPPALLRLLAK--VPGAAEVISSEQFLRPGFDYHCPLMSLPLACQSLSEADIPRA 419 +V+LEVP +LL L+ VP +++ + L P D+ PLMSLPL C + ++ DIP A Sbjct: 330 QVVLEVPASLLALMHSLAVPTPLTLVAMGEPL-PEVDFQLPLMSLPLVCNTRAD-DIPAA 387 Query: 420 -PYLLPEADAWAGWLQRL----PHNRA-LRVGLVWAGSSAQTHPEAVRIDEQRSLPFAAL 473 PYL + W +RL P + A +R+GLV +G++ + D +RS+ + Sbjct: 388 VPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVN------DARRSIELSRF 441 Query: 474 APVVELAREHSRLEFYSVQ--MGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLVANLD 531 AP LA +L+F+ +Q + +A P V ++DFADT+ ++A +D Sbjct: 442 AP---LALARPQLDFFVIQPDLRQADRQWCEQQPGWHWV---GAAINDFADTAAVLAGMD 495 Query: 532 LLISVDTSVCHLAGALGKPVWLLNRVNTCWRWQLERSDTPWYPSFTIFRQTQATDWSEVI 591 L+ISVDT+ HLAGA+ PVW+ WRW L +D+PWYP+ +FRQ Q W +VI Sbjct: 496 LVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVI 555 Query: 592 AQVRAAL 598 +RAAL Sbjct: 556 LTLRAAL 562 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 199/411 (48%), Gaps = 19/411 (4%) Query: 197 ALRAYDRAIQEQPDFFEAQSNRGYVLFKMQRPMEALEAYDRALALDDSSPDLWFNRGSTL 256 AL A +RA+ + +L ++ R EALE Y A D + FN L Sbjct: 128 ALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHAFNMADIL 187 Query: 257 EQLYRFNEATECYRRARELKPDANSATWNDALLKLRQGDFANGWKAFESRWATEQMRAQV 316 ++ R +A + +A PD A A + L Q +A GW+A E+R+ ++ + Sbjct: 188 RRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRG 247 Query: 317 RHFLQPLWLGEQSLQGKTILIHAEQGFGDTLQFVRYLPRVAALGARVILEVPPALLRLLA 376 +P W + ++GK +L+ AEQG GDTLQF RY+P VA A V L P +LL +LA Sbjct: 248 IDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLA 307 Query: 377 KVPGAAEVISSEQFLRPGFDYHCPLMSLPLACQSLSEADIPRAPYLLPE---ADAWAGWL 433 +++ P D H L+SLPL P +PYL + W +L Sbjct: 308 PCLPQVRCMANPGEA-PDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYL 366 Query: 434 QRL--PHNRALRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELAREHSRLEFYSV 491 L R R+G+ WAG T + R +P ALAP+ L +F S+ Sbjct: 367 SALWPAMPRRPRLGIAWAGRQYAT------VHHSRDIPLDALAPLWTLP-----ADFVSL 415 Query: 492 QMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLVANLDLLISVDTSVCHLAGALGKPV 551 Q+ E AH A R +P L D+ADT+ L+ LDL+ISVDT+V HLAGALG P Sbjct: 416 QV-EVPAGDQAAHATLAQ-RLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPC 473 Query: 552 WLLNRVNTCWRWQLERSDTPWYPSFTIFRQTQATDWSEVIAQVRAALQQQL 602 L R + WRW ++ S TPWYPS + RQ + W V+ ++ A Q+L Sbjct: 474 LLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRL 524 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 82/189 (43%) Query: 90 GRDDEAVQRYDQILTHNPAFTDALLARGAALRRLKRSREALADFERAVALAPDNADAWFQ 149 GR D+A Y+ +L +P AL G L + + EAL E A AL PDNAD Sbjct: 32 GRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNADWHND 91 Query: 150 LGNSQHEHYGYRDARASYERAVALRPDFIEAWFNLGNTCKDSYQFEEALRAYDRAIQEQP 209 GN A +Y A+ALRPD W NLG + +A+ A++RA+Q P Sbjct: 92 RGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAISAFERALQIDP 151 Query: 210 DFFEAQSNRGYVLFKMQRPMEALEAYDRALALDDSSPDLWFNRGSTLEQLYRFNEATECY 269 DF + + G + M+A RA L W G + L R EA E Y Sbjct: 152 DFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAEAY 211 Query: 270 RRARELKPD 278 R +PD Sbjct: 212 RAWLREEPD 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,912,053 Number of extensions: 81357 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 10 Length of query: 603 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 512 Effective length of database: 1,188,985 Effective search space: 608760320 Effective search space used: 608760320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)