BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3482.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA synthe...   538   e-154
gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...   128   5e-31

>gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/294 (92%), Positives = 277/294 (94%)

Query: 1   MSAAGYVGRFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDI 60
           MS   YVGRFAPSPSGPLHAGSLVAALASYLDARVH GRWLLRIEDIDETRTV G A DI
Sbjct: 1   MSCHAYVGRFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDI 60

Query: 61  IATLAALDMHSDGPVLVQSQRKARYELARQRLGALAYPCGCSRKEIADSRVGTASDGAAI 120
           IATLAALDM SDGPVLVQSQRKARY+LAR RLGALAYPCGCSRKEIADSRVGTASDGAA+
Sbjct: 61  IATLAALDMRSDGPVLVQSQRKARYQLARDRLGALAYPCGCSRKEIADSRVGTASDGAAL 120

Query: 121 YPGTCRPGLAPGKPARTLRLRVPDAGQPGELVQFQDRWLGPQAQHLASEVGDFVLQRADG 180
           YPGTCR GLAPGK ARTLRLRVPD GQ GELVQF+DRWLGPQAQHLA+EVGDFVLQRADG
Sbjct: 121 YPGTCRHGLAPGKQARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADG 180

Query: 181 FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYLHVPLLMNTTGEK 240
           FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQ LLGYPTPRYLHVPLLMN TGEK
Sbjct: 181 FWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEK 240

Query: 241 FSKQNGAQALDLGQPLQALQQAAAFLGLETGAARDREGFWRLALTGWQARFGPQ 294
           FSKQNGAQALDL QPLQALQQAAAFLGL+TGAARDREGFW LALTGWQARFGP+
Sbjct: 241 FSKQNGAQALDLNQPLQALQQAAAFLGLDTGAARDREGFWALALTGWQARFGPR 294


>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  128 bits (322), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 20/262 (7%)

Query: 1   MSAAGYVGRFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDI 60
           M+A     RFAPSP+G LH G    AL S+  AR   G ++LRIED D  R+ P     I
Sbjct: 17  MTATQVRTRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAI 76

Query: 61  IATLAALDM-HSDGPVLVQSQRKARY-ELARQRLG-ALAYPCGCSRKEIADSRVGTASDG 117
           I  +  L + H +GP   Q +R  RY E+  Q L    AY C C+ +E+   R    + G
Sbjct: 77  IEGMQWLGLEHDEGP-FYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAG 135

Query: 118 AAI-YPGTCRPGLAPGK--PA------RTLRLRVPDAGQPGELVQFQDRWLGPQAQHLAS 168
               Y GT RP   PGK  PA        +R + P  G+    V + D   GP       
Sbjct: 136 EKPRYDGTWRP--EPGKTLPAIPEGRKPVVRFKNPQDGE----VSWNDVVKGPITIS-NR 188

Query: 169 EVGDFVLQRADGFWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYL 228
           E+ D V+ R DG   Y   VVVDD +  +T ++RG D +++T RQI + + LG   P Y 
Sbjct: 189 ELDDLVIARPDGTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYG 248

Query: 229 HVPLLMNTTGEKFSKQNGAQAL 250
           HVP+++   GEK SK++GA ++
Sbjct: 249 HVPMILGADGEKLSKRHGAVSV 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 926,411
Number of extensions: 36499
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)