BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3476.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase...   624   e-180
gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase...   259   4e-70

>gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  624 bits (1609), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 326/401 (81%), Positives = 365/401 (91%)

Query: 1   MGSFTSFAVFLFSAISLIIPSGFSVGAILLTLGSFTLVNKSIRSTLSREDRLLIAVLVIY 60
           MGSFTSF+VFLFSAISLI+PSGFSVG++LL LGS TLVNKS+R+TL+REDRL++AVL+ Y
Sbjct: 1   MGSFTSFSVFLFSAISLIVPSGFSVGSVLLALGSLTLVNKSVRTTLNREDRLILAVLLAY 60

Query: 61  FLVTVTMHLYHHESLKEYDLPLRFLLAAMALLTLRAYPPSPAGFWSGLILGGVGSCLFAG 120
           F VTV M L HHES KEYDLPLRF LAA ALL LRAYPP+PA FWSGLILGG+G+ +FAG
Sbjct: 61  FAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFWSGLILGGIGAGVFAG 120

Query: 121 WQYFAHGARANGYTNAIQYGDISFIIGILCLTGFTWALQQRSARTWVILLILGGISGLLG 180
           WQYFAH  RA GYTNAIQYGDISFIIGILCLTG TWA+QQR+AR WV LLI+GG+ GL+G
Sbjct: 121 WQYFAHNVRATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGLMG 180

Query: 181 SLFTGSRGSWVGLPVCLLILCVYYSRSIQPRYVWGGLAALIAAIVVVFAVLPSTDYRARV 240
           SLFTGSRGSWV LP+CLLILCVYYSRSI  RYVWG LAAL+AAI +VF V+PSTD+RAR+
Sbjct: 181 SLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRARI 240

Query: 241 TLAFSEASTYMHKKDADSSIGTRMEMWRTGAMAAAESPLLGIGKAGFVAWESKQIEAGKV 300
           +LAFSEASTYM KKDADSSIGTRMEMWR GAMA AE+P+LG+GKAGFV WE+ QIEAGK+
Sbjct: 241 SLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAGKI 300

Query: 301 NPLMSGNNHVYNEWLDALVKRGIPGLLVLLALYFIPLRLFIAHLKSAPAHAKPYAVGGIL 360
           N LMSGNNHVYNEWLDALVKRG+PGLLVLLALYF+PLRLFIA LKSAP  AKPYA+GG+L
Sbjct: 301 NALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAPEQAKPYALGGVL 360

Query: 361 LIVNFIGFGFSQVFMAHNSGVMTLGFTMVILWGLLRGQEER 401
           LIVN+IGFGFSQVF+AHNSGVMTLGFTMVILWG+LRG+E R
Sbjct: 361 LIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGMLRGEESR 401


>gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score =  259 bits (661), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/401 (42%), Positives = 248/401 (61%), Gaps = 4/401 (0%)

Query: 1   MGSFTSFAVFLFSAISLIIPSGFSVGAILLTLGSFTLVNK-SIRSTLSREDRLLIAVLVI 59
           M  ++S AVFL  A+SL++PSGFS+G+++L LG+  L+ K   R+ L RED L++  L+ 
Sbjct: 19  MPFYSSLAVFLLVALSLVVPSGFSLGSLMLMLGAAVLLRKGKPRAILYREDWLIMLALLS 78

Query: 60  YFLVTVTMHLYHHESLKEYDLPLRFLLAAMALLTLRAYPPSPAGFWSGLILGGVGSCLFA 119
           YF V   ++L H    +EYD PLRFLLA  ALL LRAYPP P   W+G  +G VG+ L +
Sbjct: 79  YFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLS 138

Query: 120 GWQYFAHGA-RANGYTNAIQYGDISFIIGILCLTGFTWALQQRSARTWVILLILGGISGL 178
            WQ+ A GA R  G TN IQYG+I+ ++ IL   G   A++ +    W ++   G I GL
Sbjct: 139 LWQWLADGAARPGGSTNPIQYGNIAALLAILAACGLARAIRLQQPLRWKLMHAAGLILGL 198

Query: 179 LGSLFTGSRGSWVGLPVCLLILCVYYSRSIQPRYVWGGLAALIAAIVVVFAVLPSTDYRA 238
             S+ +GSRGSW+ LPVC  +      R+   R V   L A   A++V  A+LP +   A
Sbjct: 199 TASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQ-LGAGSLAMLVCLALLPQSPLSA 257

Query: 239 RVTLAFSEASTYMHKKDADSSIGTRMEMWRTGAMAAAESPLLGIGKAGFVAWESKQIEAG 298
           R+ LA +E + Y+ + DADSS+GTR+EMWR G   A +  L+G GK G +  + + +  G
Sbjct: 258 RLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVGWGKQGMIDAKHEMVSQG 317

Query: 299 KVNPLMSGNNHVYNEWLDALVKRGIPGLLVLLALYFIPLRLFIAHLKSAPAH-AKPYAVG 357
           + +P +  + H++NE+LDALVKRGIPGL  LL LY +PL LF    + A  + A+  A  
Sbjct: 318 QASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFHRQRRLAAGYEARLAASA 377

Query: 358 GILLIVNFIGFGFSQVFMAHNSGVMTLGFTMVILWGLLRGQ 398
           G++++++++ FG +Q F+ HN+GVM   F   ILW L + Q
Sbjct: 378 GVMMVLSYLAFGLTQAFLTHNNGVMLYAFLCSILWALCQEQ 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,098,116
Number of extensions: 40988
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)