BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3475.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   621   e-179
gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   304   5e-84

>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  621 bits (1601), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/339 (88%), Positives = 310/339 (91%), Gaps = 1/339 (0%)

Query: 1   MNSSEPMLQNQAHRASSANDEAWHIAFCVDNHYFRAMGAMLASLVANNPSRHFVFHVFAF 60
           M SS  MLQN AH +++A D AWHIAFCVDNHYFRAMGAMLAS+VANNP R FVFHVFAF
Sbjct: 1   MTSSASMLQNPAH-STTAADAAWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAF 59

Query: 61  AISADNTRRMRSIEANPNIKVVPHLVAPETFAEFAEMIAKSYYSLSTFTRLIVPATLKDQ 120
           AIS DN RRMRSIE NPNIKVVPHLVA ETFAEF EMIAKSYYSLSTFTRLIVPATLKDQ
Sbjct: 60  AISDDNARRMRSIEENPNIKVVPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQ 119

Query: 121 TDRVLYLDADMLCVGDLEELMAMDLGDATALVVDDVGWETPNGRDGRYSVLGLKHPRYFN 180
           TDRVLY+DADMLCVG LEELM MDL    ALVVDDVGWE P GRDGRYSVLGLKHPRYFN
Sbjct: 120 TDRVLYVDADMLCVGSLEELMGMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFN 179

Query: 181 AGMLYINIPVWEKNKVSEAAIRALVSNPEKLSFNDQDALNIVLDGQVRYIPVKWNYIYSM 240
           AGMLYINIP WEKNKVSEAAIRALVSNP+KL+FNDQDALNIVLDGQ RYIPVKWNYIYSM
Sbjct: 180 AGMLYINIPEWEKNKVSEAAIRALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSM 239

Query: 241 IADLKQGRQSMTPVGDARIIHFAGLVKPWIDWSGHAARELYVRYHALSAWSDLALDPAPL 300
           IADLKQGRQ+M+PVGDARIIHFAGLVKPWIDWSGHAARELY+RYH LSAWSDL LD APL
Sbjct: 240 IADLKQGRQTMSPVGDARIIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPL 299

Query: 301 NHKEMRVYARFLIKRGHYACGLYWNARFLLTAVRRKLGR 339
           NHKEMRVYARFLIKRG YACGLYWNARFLLTA+RRKL R
Sbjct: 300 NHKEMRVYARFLIKRGDYACGLYWNARFLLTALRRKLRR 338


>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  304 bits (779), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 145/308 (47%), Positives = 202/308 (65%), Gaps = 4/308 (1%)

Query: 22  AWHIAFCVDNHYFRAMGAMLASLVANNPSRHFVFHVFAFAISADNTRRMRSIEANPNIKV 81
           ++HIAFCVDN+YFRAMG  +AS+VANNP +HF FHV AF +S D+ RR++ +EA   +K 
Sbjct: 19  SFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAMYRVKT 78

Query: 82  VPHLVAPETFAEFAEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYLDADMLCVGDLEELM 141
             HL+    F +F+  +  S+YSLS FTRL++P  L + TDRVLYLDAD+LC   L+ L+
Sbjct: 79  ELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNRLDALV 138

Query: 142 AMDLGDATALVVDDVGWETPNGRDGRYSVLGLKHPRYFNAGMLYINIPVWEKNKVSEAAI 201
            MD+    A+VV D     P     R + L L H  YFN G+++INIP W    ++   +
Sbjct: 139 DMDISQDIAVVVPD----APVTLQRRVAALELAHKEYFNGGVIFINIPKWLAEDITPKTL 194

Query: 202 RALVSNPEKLSFNDQDALNIVLDGQVRYIPVKWNYIYSMIADLKQGRQSMTPVGDARIIH 261
            AL+++   + FNDQDALNIVL+G+ RY+  KWNY+Y +I DL   + ++ PVG A  +H
Sbjct: 195 DALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFVH 254

Query: 262 FAGLVKPWIDWSGHAARELYVRYHALSAWSDLALDPAPLNHKEMRVYARFLIKRGHYACG 321
           FAG VKPW  WS H A  L+ RY  +S W+D+ALD  P N KE+R+++RF+ ++G     
Sbjct: 255 FAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLES 314

Query: 322 LYWNARFL 329
           L W  R+L
Sbjct: 315 LKWYLRYL 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,004
Number of extensions: 45308
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)