BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3473.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS heptosyltransfe...   678   0.0  

>gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/366 (88%), Positives = 342/366 (93%)

Query: 8   NTLSTLIPAELLQKSDKILFIAHLALGDFTYLQNFFRGFAAQHPRMKIHLWVDEVRRTAD 67
           +T +TLIPA+LL+KSDKILFIAHLALGDFTYLQNFF+ FAAQHP +K+HLWVDEVRRTAD
Sbjct: 2   STQATLIPADLLKKSDKILFIAHLALGDFTYLQNFFKAFAAQHPHLKVHLWVDEVRRTAD 61

Query: 68  ASQWPHLKKYSLYDWTAACPFFAKVYTQTYSPELYRASIAEARREHYPIVVSLATLRPHL 127
           +SQWPHL+KY+LYDWTAACPFFAKVYT+TYSP LYR SI EAR EHYPIVVSLATLRPHL
Sbjct: 62  SSQWPHLQKYALYDWTAACPFFAKVYTRTYSPALYRDSIEEARAEHYPIVVSLATLRPHL 121

Query: 128 YAGLAREISPEGWVVGMKKSVKLFQPHHLLAYRKLDAAMPPYHSATPEHHISDVYAHWFR 187
           YAGLAREISPEGWVVGMKK V L QPHHLLAYRKLDA MPPY S+ PEHHISDVYAHWFR
Sbjct: 122 YAGLAREISPEGWVVGMKKKVSLLQPHHLLAYRKLDAVMPPYRSSQPEHHISDVYAHWFR 181

Query: 188 QLSGLEVSGQARFPFVDIPAQWQHYAQDQLAAWQFAPRAGKLVFINPYAKTKKRCWPLEH 247
           QLSGLEV+GQARFPFVDIP QW+ YAQDQLAAWQFAPR GKLVFINPYAKT+KRCWPLEH
Sbjct: 182 QLSGLEVTGQARFPFVDIPPQWRQYAQDQLAAWQFAPRTGKLVFINPYAKTRKRCWPLEH 241

Query: 248 VAALIAAMQARDGWQDACFIVNAVPQELANAREVIGRYGLQRTQLFSAEENFFQLPAMLA 307
           VA LI AMQ R+GWQDA  IVNAVPQELA+AREVIGRYGLQ T+LFSAEENFFQLPAMLA
Sbjct: 242 VADLIQAMQQREGWQDARVIVNAVPQELAHAREVIGRYGLQGTELFSAEENFFQLPAMLA 301

Query: 308 CCDLIISVETAVMHLANAVQVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSVE 367
            CDLIISVETAVMHLANAV VPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSVE
Sbjct: 302 ACDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSVE 361

Query: 368 QVMKAI 373
           QVMKAI
Sbjct: 362 QVMKAI 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,179,501
Number of extensions: 48858
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)