BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3464.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase ...   599   e-173

>gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  599 bits (1545), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 291/317 (91%), Positives = 302/317 (95%), Gaps = 1/317 (0%)

Query: 34  PVTVHQSDSP-VTTHSNTSTPTAAVKAYLQDLQERIVAALEAADGKSFLSDSWKRPEGGG 92
           P +   S+ P VTTHSN ST TAAVKAYLQDLQ+RIVAALEAADGKSFLSDSW+RPEGGG
Sbjct: 8   PSSNRASERPSVTTHSNASTNTAAVKAYLQDLQQRIVAALEAADGKSFLSDSWERPEGGG 67

Query: 93  GTSRLLEEGNLLERGGVGFSHVMGQKLPPSAAANRPQLAGRAWEAMGVSLVLHPRNPYVP 152
           GTSRLLEEGNLLERGGVGFSHVMG+ LPPSAAANRP LAGRAWEAMGVSLVLHPRNPYVP
Sbjct: 68  GTSRLLEEGNLLERGGVGFSHVMGKNLPPSAAANRPHLAGRAWEAMGVSLVLHPRNPYVP 127

Query: 153 TVHMNVRFFSTHAEGEEPVWWFGGGMDLTPYYGVKEDAVHFHRTCRAALQPYGEDLYPRF 212
           TVHMNVRFF+THAEGEE VWWFGGGMDLTPYYGV++DA HFHRTCR ALQPYG++LYPRF
Sbjct: 128 TVHMNVRFFTTHAEGEEAVWWFGGGMDLTPYYGVEDDARHFHRTCRDALQPYGDELYPRF 187

Query: 213 KAWCDEYFYLKHRKEPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFLEAYLPIVAARRDT 272
           K WCD+YFYLKHRKEPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFL AYLPIVAARRDT
Sbjct: 188 KTWCDDYFYLKHRKEPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFLAAYLPIVAARRDT 247

Query: 273 PYGERERDFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPG 332
           PYGERERDFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPG
Sbjct: 248 PYGERERDFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPG 307

Query: 333 SPEAALYSDFLVHKEWL 349
           SPEAALYSDFLVHKEWL
Sbjct: 308 SPEAALYSDFLVHKEWL 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,270,641
Number of extensions: 55334
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)