BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3460.p
         (553 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312850|ref|YP_003776942.1| ATPase [Herbaspirillum seropedi...   980   0.0  

>gi|300312850|ref|YP_003776942.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 550

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/554 (92%), Positives = 526/554 (94%), Gaps = 5/554 (0%)

Query: 1   MINPLPIASHPGGLLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSDIGVPVFMADVK 60
           MI+PLPIA+H GG LCLLPQLANRHGCITGATGTGKTVTLQVLAQALS+IGVPVFMADVK
Sbjct: 1   MIHPLPIATHSGGQLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSEIGVPVFMADVK 60

Query: 61  GDLSGLGKAGSASPKTTARLAQLGLPEPAWAAAPVAFWDVYGQQGHPVRATISDMGPLML 120
           GDLSGLGKAGSASPKT ARLAQLGLPEPAWAAAPVAFWDVYG+QGHPVRAT+SDMGPLML
Sbjct: 61  GDLSGLGKAGSASPKTAARLAQLGLPEPAWAAAPVAFWDVYGEQGHPVRATVSDMGPLML 120

Query: 121 ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV 180
           ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV
Sbjct: 121 ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV 180

Query: 181 GAIQRGLIAIDEQGGDRFFGEPMLNIEDWMQTDAQGRGVINILAADRLMNAPRLYSTFLL 240
           GAIQRGLI IDEQGGDRFFGEPMLNIEDWMQTDA GRGVINILAADRLMNAPRLYSTFLL
Sbjct: 181 GAIQRGLIGIDEQGGDRFFGEPMLNIEDWMQTDAHGRGVINILAADRLMNAPRLYSTFLL 240

Query: 241 WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV 300
           WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV
Sbjct: 241 WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV 300

Query: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRPNPMVNTAQAITELGVGE 360
           TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAV AAAETFRPNPM+NTAQAITELGVGE
Sbjct: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVTAAAETFRPNPMLNTAQAITELGVGE 360

Query: 361 ALVSFLDDKGRPNMVERGYVLTPASQIGPLSAEERRALIASSLVAGVYEQAIDRESAYER 420
           ALVSFLD+KGRPNMVERGYVLTPASQIGPLS  ERRALIASSLVAGVYEQAIDRESAYER
Sbjct: 361 ALVSFLDEKGRPNMVERGYVLTPASQIGPLSQAERRALIASSLVAGVYEQAIDRESAYER 420

Query: 421 LKGRAVQQPQAAPAPTPNQPPAPAPAPPPVDDNAWGASAGHTAPAPATGSRPSGGARMPS 480
           LKGRAVQQP AAP   P      APAP PVDDNAWGASAG +AP PA+ SRPSGG R+P 
Sbjct: 421 LKGRAVQQPPAAPQSVPQS----APAPSPVDDNAWGASAGRSAPGPASPSRPSGGTRIPP 476

Query: 481 RQPQPQAQPLPQQDEGGGLGDLLKDAAGGLFGN-GNRRSDSPLQAMVKSAARSIGSQVGR 539
           +Q QPQ QP+PQQ EGGGLGDLLKDAAGG+FGN GNRRSDSPLQAMVKSAARSIGSQVGR
Sbjct: 477 QQSQPQPQPIPQQGEGGGLGDLLKDAAGGIFGNGGNRRSDSPLQAMVKSAARSIGSQVGR 536

Query: 540 ELIRGVLGSLMKKR 553
           ELIRGVLGSLMKKR
Sbjct: 537 ELIRGVLGSLMKKR 550


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,684,319
Number of extensions: 71380
Number of successful extensions: 337
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 463
Effective length of database: 1,193,720
Effective search space: 552692360
Effective search space used: 552692360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)