BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3449.p (646 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 1033 0.0 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 374 e-104 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 335 7e-93 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 324 1e-89 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 322 6e-89 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 1033 bits (2672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/644 (84%), Positives = 603/644 (93%) Query: 1 MRYWINHLKFSRKFVLIGALAFMLFIVPTTLLVRGNLQDLAVAQREELAIQPGRDLLLLL 60 MR INHL+FSRKF LIGALAF+LFIVPTTLLVR NLQDLA+A+RE+LA++PGRDLLL+L Sbjct: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 Query: 61 KQMQQHRGLSALYLADGDGAAASRAERQKEVEATLERVRTGLLPLQDKDLIDTLDRLATD 120 KQMQQHRGLSALYL+D + AA RAERQK+VEATLERVRTG+LPLQDK+L+++L+R+A+ Sbjct: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPLQDKELMESLERVASQ 120 Query: 121 WRALAQSIAAKSITGAQSNQQHAQLIARELLLLDDLTNSSGLALESEAALFYVQRAVMSE 180 WRALAQ++++K+ITGAQSN QHA+LIA EL L+D L NSSGLALE+EAALFYVQRAVM+E Sbjct: 121 WRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNE 180 Query: 181 LPQLTEALGQARARGAVILGRGQADAEERARLESLADRARRSYENARRSLSMAAGKHALP 240 LPQLTEALGQ RARGAV+LGRGQA AEERARLE+LADRARRSY++AR+SL++AAG+HALP Sbjct: 181 LPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHALP 240 Query: 241 ATVEAARVAAVADADEAFKLAENAIVRADQLTMPAPQWVATMTRIIDTQFVLVNASFEMM 300 A +E AR A+ A+E FKLA++AI+RAD L+MPAP+WVATMTRIIDTQFVLVNASF++M Sbjct: 241 ANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLM 300 Query: 301 RDELQAKIPRLRNELIVLCLALAALALAALWVMVAITRATTAAIADAVRLTEAVSAGDLT 360 RDELQAKIPR+RNEL++LC L LA AALWVMVAITRATT+AI DAVRLTEA+SAGDLT Sbjct: 301 RDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLT 360 Query: 361 QHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQ 420 QHV++ GSDEVARLLTAMQ MTA+LS VV SVRSNSESVATASAQIAQGNADLSKRTEEQ Sbjct: 361 QHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQ 420 Query: 421 ASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASS 480 ASALQQTAASMEELGSTV QNADGARQAG LAREAA +A QGG VVQQVVQTMQG+HASS Sbjct: 421 ASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASS 480 Query: 481 DRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIK 540 DRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIK Sbjct: 481 DRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIK 540 Query: 541 ELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVT 600 ELITASV+QVGQGTQLADQAGKTMEEIV+SIRRVSDIMVGINAATAEQNTGIAQVGQAVT Sbjct: 541 ELITASVEQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVT 600 Query: 601 QMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAVFRVASRAL 644 QMD+TTQQNAALVE+SAAAAISLSGQARELVQAVAVFR+ RA+ Sbjct: 601 QMDTTTQQNAALVEESAAAAISLSGQARELVQAVAVFRLGQRAV 644 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust. Identities = 270/612 (44%), Positives = 372/612 (60%), Gaps = 15/612 (2%) Query: 7 HLKFSRKFVLIGALAFMLFIVPTTLLVRGNLQDLAVAQREELAIQPGRDLLLLLKQMQQH 66 +LK +KF L+G L +LF VPTTL + + Q+E ++P R LL ++ MQQH Sbjct: 7 NLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSVQLMQQH 66 Query: 67 RGLSALYLADGDGAAASRAERQKEVEATLERVRTGLLPL-QDKDLIDTL--DRLATDWRA 123 RG+SA+ L A R + EV+ L + L + +D I L ++LA W Sbjct: 67 RGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQLAA-WTK 125 Query: 124 LAQSIAAKSITGAQSNQQHAQLIARELLLLDDLTNSSGLALESEAALFYVQRAVMSELPQ 183 + ++A++SIT +S H+ IA L + L + ++ + + A +P Sbjct: 126 VRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAFIAMPA 185 Query: 184 LTEALGQARARGAVILGRGQADAEERARLESLADRARRSYENARRSLSMAAGKHA----- 238 LTE LG+ARARGA +L + + EER L ++ +RA+ +AR+S + +A Sbjct: 186 LTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANAEIGVK 245 Query: 239 LPATVEAA-RVAAVADADEAFKLAENAIVRADQLTMPAPQWVATMTRIIDTQFVLVNASF 297 L +T E A R+ +E KL ++ +L+ P + T ID QF + Sbjct: 246 LGSTFEKADRLG-----NEVMKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVT 300 Query: 298 EMMRDELQAKIPRLRNELIVLCLALAALALAALWVMVAITRATTAAIADAVRLTEAVSAG 357 E++ +L + LR E + + A+ ALAL W+ V ITR+ T I +V + V+ Sbjct: 301 EVLAGQLDTQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADY 360 Query: 358 DLTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRT 417 DLT +G DE A+LL ++ MTA L +VG VR++ E + AS +IA GNADLS+RT Sbjct: 361 DLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRT 420 Query: 418 EEQASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIH 477 E QAS+L++TA++MEEL STVQ NA+ ARQA QLA A+ +A +GG VV VVQTM I Sbjct: 421 ESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIK 480 Query: 478 ASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAR 537 SS RI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+ Sbjct: 481 TSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 540 Query: 538 EIKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQ 597 EIKELI+ SVD+V G +L D+AG TM EIV+S+R+V+ IM I A+ EQ+TGI QV Sbjct: 541 EIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVND 600 Query: 598 AVTQMDSTTQQN 609 A+TQM++ TQQN Sbjct: 601 AITQMEAITQQN 612 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 335 bits (859), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 190/318 (59%), Positives = 252/318 (79%) Query: 322 LAALALAALWVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTM 381 LAA+ + AL + V + RA + + +AV + E V+ GDLT + +DE L+ +++ M Sbjct: 197 LAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAM 256 Query: 382 TAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQN 441 L ++VG VR+ ++++ TAS +IA GN DLS RTEEQA +L++TA++MEEL +TV+QN Sbjct: 257 NDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQN 316 Query: 442 ADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILA 501 AD ARQA QLA A+DIA+QGGAVV QVVQTM+GI SS+RI+DII VIDGIAFQTNILA Sbjct: 317 ADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILA 376 Query: 502 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAG 561 LNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIK+LI SV++VG G+QL ++AG Sbjct: 377 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAG 436 Query: 562 KTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAI 621 TM E+V+S+RRV+D++ I+AA+ EQ+TGI ++ +A+TQMD TQQNAALVE++AAAA Sbjct: 437 ATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQ 496 Query: 622 SLSGQARELVQAVAVFRV 639 SL QA L Q V+VF++ Sbjct: 497 SLQDQAARLSQVVSVFKL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 324 bits (831), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 193/321 (60%), Positives = 242/321 (75%), Gaps = 6/321 (1%) Query: 319 CLALAALALAALWVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAM 378 C+ LA L A+WV I R + +AV + + V+ GDLT +E G DE +LL A+ Sbjct: 200 CIGLAMLL--AVWVSRLIARP----LEEAVSVAQRVAGGDLTTRIEPAGKDETGQLLVAL 253 Query: 379 QTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTV 438 ++M L +VG VR ++++ TAS +IA GN DLS RTEEQAS+L++TA++MEEL STV Sbjct: 254 KSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAMEELTSTV 313 Query: 439 QQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTN 498 +QNAD ARQA QLA A+++ASQGGAVV QVV TM I+ASS +I+DIIGVIDGIAFQTN Sbjct: 314 KQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIAFQTN 373 Query: 499 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLAD 558 ILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIKELI SV QV G++L + Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVE 433 Query: 559 QAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAA 618 +AG TM E+V S+RRV+DI+ I++A+ EQ+ GI QV A+ QMD TQQNAALVE++AA Sbjct: 434 RAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAA 493 Query: 619 AAISLSGQARELVQAVAVFRV 639 AA SL QA L Q V F++ Sbjct: 494 AAQSLQEQAETLTQTVGFFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 322 bits (825), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 197/350 (56%), Positives = 248/350 (70%), Gaps = 2/350 (0%) Query: 290 FVLVNASFEMMRDELQAKIPRLRNELIVLCLALAALALAALWVMVAITRATTAAIADAVR 349 V +N S DE + + R IV LA L + L +VA + + +AV+ Sbjct: 167 IVKINTSGSAQADEEASTVFRGAQRWIVGLLAATVLIASLLAFLVATN--VSRPLKEAVQ 224 Query: 350 LTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQG 409 + + V+ GDLT + G DE L+ A++ M L +V VR ++++ TAS +IA+G Sbjct: 225 IAQRVARGDLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARG 284 Query: 410 NADLSKRTEEQASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQV 469 N DLS RTE+QA +L++TA++MEEL STV QNAD ARQA QLA A+DIASQGG VV QV Sbjct: 285 NLDLSNRTEQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQV 344 Query: 470 VQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 529 VQTM+GI SS RI+DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLA Sbjct: 345 VQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 Query: 530 QRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQN 589 QRSA AA+EIKELI SV +V G+ L ++AG TM E+V+S+RRV+D++ I+AAT EQ+ Sbjct: 405 QRSAGAAKEIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQS 464 Query: 590 TGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAVFRV 639 GI +V A+TQMD TTQQNAALVEQ+AAAA SL GQA L V F++ Sbjct: 465 GGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,369,592 Number of extensions: 43980 Number of successful extensions: 741 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 397 Number of HSP's successfully gapped: 72 Length of query: 646 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 555 Effective length of database: 1,188,985 Effective search space: 659886675 Effective search space used: 659886675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)