BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3447.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...   208   2e-55
gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...    60   8e-11

>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  208 bits (529), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 112/130 (86%)

Query: 34  QESTASLAAIVKVLHGDVQTQRGGKMQPLGIGTRLYAGDRVVTGAASSVGFTLRDDTLIS 93
           Q+  A+ AAIVKV+ G+VQ QR GK +PL +G RLY GDRV+T AASSVGFTLRDDTLIS
Sbjct: 37  QQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLIS 96

Query: 94  LGPNSQFQLEQFAYNDTTDEGNIAVRLTKGTLRYVSGLIGKHAPQRQQLATPTATIGIRG 153
           LGPNSQF LEQF +N+ TDEGNIAVR+ KGTLRYVSGLIGKHAP+RQQ +TPTATIGIRG
Sbjct: 97  LGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRG 156

Query: 154 TDFIVEVGDE 163
           TDFIVEV  E
Sbjct: 157 TDFIVEVAGE 166


>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 60.1 bits (144), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 62  LGIGTRLYAGDRVVTGAASSVGFTLRDDTLISLGPNSQFQLEQFAYNDTTDEGN-IAVRL 120
           L + + +  GD ++T   +       D+  I L P ++  + ++ Y++   E + +A+ L
Sbjct: 61  LSVKSAILQGDTLITERETYTRVKFVDNAEIVLRPGTEVAVNKYIYDEKKPENDSVAIGL 120

Query: 121 TKGTLRYVSGLIGKHAPQRQQLATPTATIGIRGTDF 156
            KG LR V+GL+GK   +     TPTATIGIRGT F
Sbjct: 121 VKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTHF 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,043
Number of extensions: 19536
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)