BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3446.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum se...   321   3e-89
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    66   2e-12
gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    55   3e-09

>gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum
           seropedicae SmR1]
          Length = 190

 Score =  321 bits (822), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 176/190 (92%)

Query: 5   LVLMALVLAGCAGPKERFVLLPQADGSASSIVVKTATGETTLSTPYAATESIGGKLAKTE 64
           +  +A++LAGCAGP+ERF+LLPQ DGSASSIVVKTATGET L+TPYA+ E+ GGK+ KT 
Sbjct: 1   MAALAVLLAGCAGPRERFLLLPQPDGSASSIVVKTATGETALATPYASVETAGGKVDKTL 60

Query: 65  TLAQADVEKRYAEVLGSLPARPRSYDLLFELGTDRLTPASQELLKKAMAEIKDFPAGEFI 124
           T+A ADVEKRYA+VLGSLPARPRSYDLLFELGTDRLTPASQ+ LKKA+AEIKDFPAGEF+
Sbjct: 61  TVAPADVEKRYADVLGSLPARPRSYDLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFV 120

Query: 125 LIGHADNIGSDAINDALSLRRARLIERELQRAEVKALSIEVVGKGARDPRVPQKRGVPEP 184
           L GHADNIGS+  NDALSLRRARLIEREL+RA+VKALSIEV+GKGARDPRVPQKRGV EP
Sbjct: 121 LTGHADNIGSETNNDALSLRRARLIERELRRADVKALSIEVIGKGARDPRVPQKRGVAEP 180

Query: 185 RNRFVEIKIR 194
           RNRFVEIKIR
Sbjct: 181 RNRFVEIKIR 190


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%)

Query: 90  DLLFELGTDRLTPASQELLKKAMAEIKDFPAGEFILIGHADNIGSDAINDALSLRRARLI 149
           D+ F+ G   + P  + +L +  A + + PA    ++GH DN GSDAIND LSL+RA   
Sbjct: 109 DISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRT 168

Query: 150 ERELQRAEVKALSIEVVGKGARDPRVPQKRGVPEPRNRFVEIKI 193
              L    V A    + G+G+ +P V         RNR VEI +
Sbjct: 169 RDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 212


>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%)

Query: 90  DLLFELGTDRLTPASQELLKKAMAEIKDFPAGEFILIGHADNIGSDAINDALSLRRARLI 149
           D  F+     L PA +  L + +  +K       I +GH D+IGS A N  LS+RRA  +
Sbjct: 95  DAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESV 154

Query: 150 ERELQRAEVKALSIEVVGKGARDPRVPQKRGVPEPRNRFVEIKI 193
           +  L    V+A  +   GKG   P    K      +NR VEI++
Sbjct: 155 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,949
Number of extensions: 22243
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)