BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3445.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    88   4e-19
gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...    67   1e-12
gi|300314064|ref|YP_003778156.1| threonine efflux protein [Herba...    59   3e-10

>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 88.2 bits (217), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 11/216 (5%)

Query: 1   MPLDTLLLFVPSCFALNMAFGPNNLLSMTIGAQHGLRPALLAAAGRLVAFALMIAIAALG 60
           M   T   F  +   + ++ G   +LSM+ G  +G+R       G  +A  +++ IA  G
Sbjct: 1   MDYQTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAG 60

Query: 61  MGALLMASQIAFTVVKLLGAAYLVWLGCKIFFAKATVSAQGVELG----------RGGIR 110
           +G+LL+AS+ AF V+K+ GA YL++LG   + A+     QG  L           R    
Sbjct: 61  VGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWW 120

Query: 111 SFLRKEFLVAIGNPKAILIFTAFFPQFVVPGN-YWGSFLLLGSIFLTLELVAIAAYAYAG 169
                 FL    NPK I+   A  PQF+      W   L+L    + ++LV +  YA+A 
Sbjct: 121 QRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAA 180

Query: 170 TRLSGLLQNARGLRWMNRISGGMMIVFGTILALARR 205
           +RL    ++ + +R  NR  GG++++ G  L   +R
Sbjct: 181 SRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKR 216


>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 8/207 (3%)

Query: 3   LDTLLLFVPSCFALNMAFGPNNLLSMTIGAQHGLRPALLAAAGRLVAFALMIAIAALGMG 62
           +  L+LF+ +   L +A GP+NL  +T G   G +  L+AAAG          +A LG  
Sbjct: 1   MPDLILFLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFA 60

Query: 63  ALLMASQIAFTVVKLLGAAYLVWLGCKIFFAKATVSAQGVELGRGG----IRSFLRKEFL 118
           AL+ A   A+  ++  GAAYL +LG +   + +   A   + G+G     +R    +  L
Sbjct: 61  ALIKAYPPAYHALQYAGAAYLAYLGVRTLRSASAGLALAAD-GQGAAAVPLRRIYWQSVL 119

Query: 119 VAIGNPKAILIFTAFFPQFV--VPGNYWGSFLLLGSIFLTLELVAIAAYA-YAGTRLSGL 175
             + NPK  L F AF PQFV    G+     L+L  +F+       +A A ++G   +  
Sbjct: 120 ANMLNPKVTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYF 179

Query: 176 LQNARGLRWMNRISGGMMIVFGTILAL 202
            + A     +NR++G   I  G  +AL
Sbjct: 180 RRRASASVHLNRLAGCAFIGLGIRMAL 206


>gi|300314064|ref|YP_003778156.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)

Query: 21  GPNNLLSMTIGAQHGLRPALLAAAGRLVAFALMIAIAALGMGALLMASQIAFTVVKLLGA 80
           GP     +T  A+ G+R    A AG ++   +++ +AA G+ ALL A+ + F  ++ LGA
Sbjct: 28  GPGTFCVLTCAAKGGVRGGFAAQAGLMLGDVVLMFLAAAGVAALLHANPLLFHGLQYLGA 87

Query: 81  AYLVWLGCKIFFAKATVSAQGVELGRGGIRSFLRKEFLVAIGNPKAILIFTAFFPQFVVP 140
           AYL +LG ++ FA+       V        +  R+ FLV + NPKAI+ + AFFP F+ P
Sbjct: 88  AYLAYLGARLLFARGEGGGTVVPFSNA---AEFRRGFLVTLFNPKAIVFYMAFFPLFLDP 144

Query: 141 GNYWG--SFLLLGSI 153
               G  +F+ +G++
Sbjct: 145 ATQQGALTFITMGAV 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 524,775
Number of extensions: 18315
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 4
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)