BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3444.p (544 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 729 0.0 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 655 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 472 e-134 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 465 e-132 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 445 e-126 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/544 (74%), Positives = 464/544 (85%), Gaps = 1/544 (0%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISE 60 MKI+D+KISVRLGACF+ALI+VMCVIA VGVKNL V+D TDEIVNDRYVKVAL QI++ Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVNTAARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKD 120 KVNT AR++RNAI+A + +KYLDR T +VSEH+A++EK NTP+GSEL +K Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIK 180 ARADY+K R V+ LI QK+ EA +LF + IP QDKYFAA+KEM +FQ+ +M+KS + Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 SRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAAS 240 + S+ A+ +M+ LS VA+LLS +CA++ITRSITRPLNEAV+VA+AVAAGDLT+QI A+ Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEE 300 SKDETGALL +LK MNDNLHRIV +VR GTDTI TAS +IATGNLDLSSRTEQQAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEI 360 TASAMEELTSTV+QNADNARQANTLA ASQVAIQGGSVVGEVV TM +IN+ASRKIV+I Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTS 420 I+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 V RVE+GSRLV QAGATM EVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGDFRHATAAAATMMRHTVDVTPHPA 540 QQNAALVE+AAAAAQSLQEQS RLS+TVGIF+LG+ D H + + ++ +V V P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGN-DHAHQPSPLSAPVQRSVQVAPARP 540 Query: 541 GLPR 544 L R Sbjct: 541 VLAR 544 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/517 (69%), Positives = 435/517 (84%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISE 60 MK+ DIKISVRL CF+ LI VMC+I VG+K+L +++ + IV DRY K+AL +I + Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KVNTAARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKD 120 VN AAR +RNA++ + +YLDR+ N+ + +E + +EKI++T +G ELF I++ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIK 180 AR+ Y PRD + LI+ QKK EA + LF +VIPAQDKYF L + AFQ +ME+SV + Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 SRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAAS 240 R+T+ A+ +M+GLS+VAI L ++ A ++TRSITRPLNEAV VASAVAAGDLT+QI A+ Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEE 300 SKDETGALL++LK MND+LHRIV++VRQG+DTI TAS +IATGNLDLSSRTE+QAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEI 360 TASAMEELTSTVKQNADNARQAN+LAA AS+VA+QGGSVVG+VV TM EIN+ASRKIV+I Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTS 420 I+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID S Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 V+RV+NGSRLVEQAG TM+EVVASV+RVTDVVAEI+AAS EQSDGIEQIN AI QMD+VT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGD 517 QQNAALVEEAAAAAQSLQEQS+RLS TV +FKL S D Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHD 517 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 472 bits (1215), Expect = e-134, Method: Compositional matrix adjust. Identities = 273/519 (52%), Positives = 368/519 (70%), Gaps = 13/519 (2%) Query: 5 DIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKVNT 64 ++K++VRL A F+ ++ ++ V++ + + D+IVNDRY+KV + + VN Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 65 AARAIRN-AIIAPDEATMEK---YLDRAVGNTREVSEHMADLEKIIN---TPKGSELFNK 117 + +R AI + EK L+ AV T+E L+KI T G + Sbjct: 67 QIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEA------LDKITARQVTAVGQKKAKA 120 Query: 118 IKDARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKS 177 + +AR + + +AL++A A +Y+ +++ Q+ Y A + Q ++ Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 178 VIKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQI 237 K+ A A+++ + S A+L +I+ ++ RSI +PL EAV VA VAAGDLT +I Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 238 AASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGA 297 S+DETG L+ +L+ MNDNL IV+ VR+GT++I TASG+IA+GNLDLS+RTEQQAG+ Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 298 LEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKI 357 LEETASAMEE+TSTV+QNADNARQAN +A +AS++A+QGG +VG VVHTM EIN++SRKI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 358 VEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLI 417 V+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 Query: 418 DTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMD 477 SV +VE GS LV QAGATM +VV+SV+ VTD+VAEI+AAS EQS GIE+IN+A+ QMD Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 Query: 478 EVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSG 516 E TQQNAALVE+AAAAA+S+QEQ+ RL++++ IFKL G Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQG 519 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 465 bits (1196), Expect = e-132, Method: Compositional matrix adjust. Identities = 286/552 (51%), Positives = 374/552 (67%), Gaps = 13/552 (2%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISE 60 M+ ++ I+ RL FS LILV+ I +G+ L + D +VNDRY K+A++N IS Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVNTAARAIRNAIIAPDEATM---EKYLDR-AVGNTREVSEHMADLEKIINTPKGSELFN 116 KV+ A ++RN ++ D A + +K ++ + NT+ E L +++ P+ + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDE----LTRLVANPEAKAKLD 116 Query: 117 KIKDARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEK 176 K+ + R YA R + L + K A + E++P Q YF+ L E++ Q +M++ Sbjct: 117 KVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQ 176 Query: 177 SVIKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQ 236 SV ++ +MV +A + A I+RSITRPL+ AVEVA VAAGDLT Sbjct: 177 SVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAV 236 Query: 237 IAASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAG 296 IAA S DETG LL +L MN L IV +VR+GTD++ TAS QIATGNLDLSSRTE+QA Sbjct: 237 IAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQAS 296 Query: 297 ALEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRK 356 ALEETAS++EELTS+VKQNAD+ R+++ LAANASQVA QGG V +VV TM IN++S K Sbjct: 297 ALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHK 356 Query: 357 IVEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSL 416 IV+II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK L Sbjct: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKEL 416 Query: 417 IDTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQM 476 I+ SV +V +G+ LV QAG+TM VV S+++V+ +V EI+AA+ EQSDGIEQ+NQAI+QM Sbjct: 417 INDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQM 476 Query: 477 DEVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKL----GSGDFRHATAAAATMMRHT 532 D TQQNAALVEEAAAAAQ+LQ+Q+ RL + VG+F+L GSG A A A ++R Sbjct: 477 DNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVLRKV 536 Query: 533 VDVTPHPA-GLP 543 P LP Sbjct: 537 SAAAPRATKSLP 548 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 264/514 (51%), Positives = 352/514 (68%), Gaps = 10/514 (1%) Query: 5 DIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQ---ISEK 61 ++KI VRL F AL+++M V+ +GV L ++ D TD++ ++AL + + Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMT-----RIALKKERDAVQWH 57 Query: 62 VNTAARAIRN-AIIAPDEATMEKYLDRAV-GNTREVSEHMADLEKIINTPKGSELFNKIK 119 +R A++ D+ + Y + + + +S+ ++E I + LF+++ Sbjct: 58 AAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVG 117 Query: 120 DARADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVI 179 RA Y R + + A A A + ++ D Y + FQ +++++ Sbjct: 118 KLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAA 177 Query: 180 KSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAA 239 +++ L ++ I+L A ++TRSITRPLN+AV +A VAAGDLT +I + Sbjct: 178 AINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDS 237 Query: 240 SSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALE 299 SS+DETG LL++LK MN NL IV +VR GT+TI TAS +IATGNLDLS+RTE QAG+LE Sbjct: 238 SSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLE 297 Query: 300 ETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVE 359 ETASAME+LTSTVKQNADNARQAN LAA+ASQVA QGG+VV +VV TM I+ +S+KI + Sbjct: 298 ETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIAD 357 Query: 360 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDT 419 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LID Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 417 Query: 420 SVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEV 479 SV +V++GSRLV +AG TM EVV SV RVT VV EIT AS EQSDGIEQ+N AI +DE Sbjct: 418 SVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDET 477 Query: 480 TQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 TQQNAALVE+AAAAA+S+Q+Q++ L++ V +F+L Sbjct: 478 TQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,130,551 Number of extensions: 35892 Number of successful extensions: 545 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 72 Length of query: 544 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 454 Effective length of database: 1,193,720 Effective search space: 541948880 Effective search space used: 541948880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)