BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3443.p (542 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 803 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 780 0.0 gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 578 e-166 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 550 e-157 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 406 e-114 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/545 (79%), Positives = 483/545 (88%), Gaps = 3/545 (0%) Query: 1 MNAFRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAR 60 M+ F++MKIGTKL L FA+ L LT+ILA ISL SIN LT SIKAAD VQ +RL PLY AR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGL 120 EALDQTG+AARNAYVFR+++DAQKELAIVDEQKQ+YLKAL+DME F G+K F+ VR GL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTN 180 L+MA+ELKRPR YRE GKMEE+RDFLVNECSPLRRQIVLDINKVI+E A+N KA QTT Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 DMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQ 240 DMA+ AS +VAVLT IVA+IS L+AFVITR LLKQLGGEPAYAA IAQQIA+GDLT+DV Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 TKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALE 300 K GDTTSLLFAIK+MRD+L AIVGKVREGTH IEQASAEIA+GNMDLSSRTEQQAGALE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVD 360 ETASAMEELMSTVKQNADNA+QASQLAVSAS+VASQGG+VVG+VV+TMEGIN SSRKIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSATAAKEIT LIND Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEA 480 SV QIEQGSSLV QAG TMENVV+SVKRVTDVVAEIS+ASQEQS+GI+Q+N++ITHMDEA Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNAALVEEAAAAANAMTEQASALSGLVSTFQLEASVTP-SITMAVGERSRKT--FTGK 537 TQQN+ALVEEAAAAAN+M QA L+GLVSTF+L S P ++ VG R+ G+ Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPGPVSAVVGAMGRRANLPVGR 548 Query: 538 ALALK 542 +LALK Sbjct: 549 SLALK 553 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/513 (78%), Positives = 465/513 (90%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREAL 63 F+ MKIGTKL L F ++LT++++ ISL+SI +LT+SIKA VQ+Q+L+PLY AREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 64 DQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGLLKM 123 DQTGIAARNAYVFRSD+DAQKELAIVDEQKQLYLKA++D+ FAGNK FE VR+G+L+M Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 124 ADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTNDMA 183 A+ELKRPR YRE G+ EEYRDFLVNECSPLRRQIV DI V+ +V AEN++A+ T+ MA Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 184 SRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKL 243 A++ VAVLT++V +IS+LIA ++TRGLLKQLGGEP YAAQIAQQIA GDLT++VQTK Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 244 GDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALEETA 303 GD +SLLFAIK MRDSLV+IV +VR+GT TIEQAS+EIASGN+DLSSRTEQQA +LEETA Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 304 SAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVDIIS 363 SAMEELM+TVKQNADNAKQASQLAVSASEVASQGGEVV +VVTTM+GIN SSRKIVDIIS Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLINDSVA 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSATAAKEIT LINDSV+ Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVS 421 Query: 424 QIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEATQQ 483 QIE+GSSLVEQAGQTMENVV+SVKRVTDVVAEIS ASQEQS+GI+Q+N +ITHMDEATQQ Sbjct: 422 QIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQ 481 Query: 484 NAALVEEAAAAANAMTEQASALSGLVSTFQLEA 516 N+ALVEEAAAAAN+M EQA ALSGLV+TF+L+A Sbjct: 482 NSALVEEAAAAANSMKEQAGALSGLVATFRLDA 514 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 578 bits (1491), Expect = e-166, Method: Compositional matrix adjust. Identities = 319/514 (62%), Positives = 402/514 (78%) Query: 1 MNAFRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAR 60 M MKIG KL L FA LLL + L A ++ INSL +I A+ ++ ++L PLY AR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGL 120 EALDQTGIAARNAYVF SD+DA+ EL IVDEQK +YL+ L+ +E A F VR GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTN 180 L+MA+ELKRPR+YR+ G ME YRDFLVNECSPLRR+IV +IN++ID++SAE+ A T Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 DMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQ 240 + A +A + +++L + +I+V+IAF ITR LL+QLGGEPAYA IAQ+IA GDL DV Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 TKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALE 300 T+ D +SLL+AIK MRDSL IV +VR+GT +IE+A +EI+SGN DLS RTE+QA +LE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVD 360 ETASAME++ S V+Q+ADNA QA+QLA SAS +A +GG+++G VV TME I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLIND 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKEI LI+ Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEA 480 SVA++E GS LV+ AG+TM +V SV+ V+ V+AEI+ +S+EQS GI Q+N +I+HMDE Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNAALVEEAAAAANAMTEQASALSGLVSTFQL 514 TQQN+ALVE++AAAA A+T QA +L+ LVSTF++ Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV 514 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 550 bits (1416), Expect = e-157, Method: Compositional matrix adjust. Identities = 297/515 (57%), Positives = 384/515 (74%), Gaps = 2/515 (0%) Query: 1 MNAFRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAR 60 MN +KIGT+L L F + ++L +IL +L +N+++A+++ +TV + +L PLY AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGL 120 EALDQTG+AARNAY+F ++A KELA++D+QK LYL ALR +E AG FE +AGL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTN 180 L MA+ELKRPR+YRE G+ME Y +FLV ECSPLRRQIV DI+ ++ V E A + Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 DM-ASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDV 239 + AS +I+A II+ + S+ A++I + LL QLGGEP YA +I +IA G+L++ V Sbjct: 181 ALFASSLRLIMACAAIILGV-SIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPV 239 Query: 240 QTKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGAL 299 T GD +SLL+ I+ MRD L ++V +VR GTH I AS+EIA GN +LS RTEQQA L Sbjct: 240 DTAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTL 299 Query: 300 EETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIV 359 E+T +AM+EL V++NADNA+QA LA SAS+VASQ G VV +VV TM I+ SSRKIV Sbjct: 300 EKTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIV 359 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLIN 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+EI LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLID 419 Query: 420 DSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDE 479 SV+ + GS LVEQAG TM++VV SV+RV+ VV EIS ASQ QS+GI ++N +I +DE Sbjct: 420 SSVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDE 479 Query: 480 ATQQNAALVEEAAAAANAMTEQASALSGLVSTFQL 514 TQQNAALVEEAAAA+ +M++QA L+ LV F+L Sbjct: 480 NTQQNAALVEEAAAASQSMSQQADHLNQLVGAFKL 514 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/519 (47%), Positives = 352/519 (67%), Gaps = 8/519 (1%) Query: 7 MKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREALDQT 66 MK+GT+L L FA +LL V++ + +++ + V+ + + E + + Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 67 GIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNF-ETVRAGLLKMAD 125 I+ RN + + D E ++ Q Y A + ++ FA + + + +A L K+A Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 Query: 126 ELKRPRQY-----REGGKMEEYR--DFLVNECSPLRRQIVLDINKVIDEVSAENDKARQT 178 + + + G + E Y FL + P+++ +++ + N +A + Sbjct: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 Query: 179 TNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSD 238 + SRA +++ +++ I + +VL AF +TR LL++LGGEP YA QIA QIA GDL Sbjct: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 Query: 239 VQTKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGA 298 + T+ GD SL+ A++ MRD L AIV +VR+G+ TI AS+EIA GN+DLS RTEQQAGA Sbjct: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 Query: 299 LEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKI 358 LEETAS+ME+L STVKQNA+NA QA+ LA++AS+VA QGG +V +VV TM+ IN SS+K+ Sbjct: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKV 364 Query: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLI 418 DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEI LI Sbjct: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 Query: 419 NDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMD 478 DSV ++E GS LVEQAG TM ++V+S++RVTDV+ EI++A++EQS+GI Q+N +I +D Sbjct: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 Query: 479 EATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLEAS 517 + TQQNAALVE+AAAAA ++ EQA+ L LVS F+L+A+ Sbjct: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAA 523 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,056,261 Number of extensions: 32751 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 71 Length of query: 542 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 452 Effective length of database: 1,193,720 Effective search space: 539561440 Effective search space used: 539561440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)