BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3439.p (582 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 758 0.0 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 447 e-127 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 442 e-125 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 438 e-124 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 422 e-119 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/591 (71%), Positives = 484/591 (81%), Gaps = 17/591 (2%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 MRFNN SIATRLAIAFS+LIL IA IV LGL RL DIN+A++LVVNDRYKKIA+INTI+G Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMT 120 K+DDVAIS+RNQLL +DP Q A EQ + L+++ + EL + +P A+A+ KV Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVED 180 R Y +LR QI++L + G ++ A++L++ ++ LQK YF +L+ S+ Q+KLMDQSV+ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 AEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAH 240 AEAAY TTR+IM+ +G+L+ FA+ IAWTISRSITRPLSRAVEVAETVAAGDLTAVI AH Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEE 300 S DETGRLLQALAAMNQKLKAIVLEVR TDSMV ASTQIATGNLDLSSRTEEQASALEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDI 360 TASSLE+LTSSVKQNADHTRKSSELA A+ VANQGG AVKQVVQTMGAINDSS KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAAKEIKELINDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 421 VNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTT 480 VNQV+SGTELVAQAG+TMD VV+SIEQV HIV EIS+AT EQS+GIEQVNQAIMQMDNTT Sbjct: 421 VNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTT 480 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGG---------PELRTMQMPQAAS 531 QQNAALVEEAAAAAQALQDQAQRLL+LV VFRLDE GG P ++ AA+ Sbjct: 481 QQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVLRKVSAAA 540 Query: 532 LKSSAVTSKALPSKQQTQPQSARPAAIGANQAPRALPNSIKDDKKEEWESF 582 ++ +K+LP+K + PAA A ALP S ++DK EEWE+F Sbjct: 541 PRA----TKSLPAKPAAPAVTNAPAA----PAAPALPASKREDKSEEWETF 583 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 447 bits (1151), Expect = e-127, Method: Compositional matrix adjust. Identities = 278/513 (54%), Positives = 359/513 (69%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+ + I+ RLA+ F+VLI + I +G+ L I+++ L+V DRY+KIAL I Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMT 120 ++ A ++RN LL + +A R + +++ ++E L R F + Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVED 180 AR Y + R ++ EL + ++E AVELL ++ Q YF L+ F QK LM+QSV + Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 AEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAH 240 + +MLG ++ + AW ++RSITRPL+ AV VA VAAGDLT I A Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEE 300 S DETG LL AL +MN L IV EVR +D++ AS +IATGNLDLSSRTEEQA ALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDI 360 TAS++E+LTS+VKQNAD+ R+++ LA TA+ VA QGG V QVVQTMG IND+SRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI+DS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTT 480 V++V +G+ LV QAG TM +VV+S+ +V +V+EIS+A++EQS+GIEQ+N AI QMD T Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRL 513 QQNAALVEEAAAAAQ+LQ+Q+ RL VSVF+L Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 442 bits (1136), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/532 (51%), Positives = 368/532 (69%), Gaps = 1/532 (0%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+ +N +I RL + F +L++ + + G+ RLG +N + V++D+Y K + I Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMT 120 +++ +A SVRN LL Q E + +L+ L D +RA ++T Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 ARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVED 180 A++ Y R ++ + +G +E A+++L+ ++ +Q A +A Q ++M + ++ Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 AEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAH 240 E+ Y R ++L A++IAW I+RSIT PL RAV VAETVAAGDLT+ I AH Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEE 300 DET LL+AL MN +L IV +VR STD++ AS++IA GNLDLSSRTEEQA++LEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDI 360 TASS+EQLT++VKQNA H ++S+LAG+A+ +A QGGE V VV+TMGAI+ SS+KIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRALAQRSATAA EIK LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 421 VNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTT 480 V +V +G++LV QAG TM +VV S+++VG +V+EISSA EQS GIEQVN AI+QMD T Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVT 480 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQAASL 532 QQNAALVE+AAAAAQALQDQA +L +VS+F+L++A E R + P + L Sbjct: 481 QQNAALVEQAAAAAQALQDQAAQLARMVSIFKLEDA-ASEPRRVAAPASPRL 531 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 438 bits (1127), Expect = e-124, Method: Compositional matrix adjust. Identities = 284/554 (51%), Positives = 376/554 (67%), Gaps = 9/554 (1%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+ ++ I+ RL F+ LI+ + I +G+ L +++A + +VNDRY K+AL I Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMT 120 K++ A S+RN ++ +P + + SQV+ H E+E P A + Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVED 180 AR Y+ R ++ +L + +R+ A L K +Q YF ++ + Q LMD+S E Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 AEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAH 240 A AA ++ IML ++ L ++L A I+RSITRPL+ AV+VA VAAGDLT I A Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEE 300 S DETG LL AL +MN L IV EVR TD++ AS +IATGNLDLSSRTE+QA ALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDI 360 TAS++E+LTS+V+QNAD+ R+++ LA TA+ VA QGG V +VVQTMG IND+SRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI+ S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTT 480 V +V SG+ LV QAG TM++VV+S+++V +V+EI++A+ EQS+GIEQ+NQAI+QMD T Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRL--DEA------GGPELRTMQM-PQAAS 531 QQNAALVE+AAAAAQ+LQ+Q+ RL + V +FRL D A P R++Q+ P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPV 541 Query: 532 LKSSAVTSKALPSK 545 L VT + P+K Sbjct: 542 LARKPVTRTSAPAK 555 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 422 bits (1084), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/518 (50%), Positives = 342/518 (66%), Gaps = 10/518 (1%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALI-----NT 57 N +I RL + F++++ I +GL RL + +A ++ + K L+ N Sbjct: 4 IGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNL 63 Query: 58 IAGKMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAK 117 +AG +AI+ +SDP A + + +++E L P +A F K Sbjct: 64 VAGIRRTIAIA-----KSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQK 118 Query: 118 VMTARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQS 177 + R Y S R +I + A G E A+ +L AY + + Q+K MD + Sbjct: 119 IGELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDT 178 Query: 178 VEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVI 237 + +A +R ++L L L + A ++ IT+PL RAV+V+ VA GDL++ I Sbjct: 179 AREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI 238 Query: 238 TAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASA 297 S DETG+LLQ+L MNQ L+ IV VR TD++ AS++IA GNLDLSSRTE+QAS+ Sbjct: 239 AVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASS 298 Query: 298 LEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKI 357 L ETAS++E+L S+V+QNAD+ R++S+LA +A+AVA QGG V QVV TMGAIN SSRKI Sbjct: 299 LAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKI 358 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELI 417 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKELI Sbjct: 359 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELI 418 Query: 418 NDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMD 477 NDSV +V G+ LV QAGNTM +VVSS+ +V IV+EIS+A+ EQ+ GIEQ+N AI QMD Sbjct: 419 NDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMD 478 Query: 478 NTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDE 515 TQQNAALVEEAAAAA ++Q QA RL+++VSVFRL E Sbjct: 479 QVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSE 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.123 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,299,025 Number of extensions: 41978 Number of successful extensions: 677 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 71 Length of query: 582 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 492 Effective length of database: 1,193,720 Effective search space: 587310240 Effective search space used: 587310240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)