BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3421.p (1351 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Her... 2561 0.0 >gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 1355 Score = 2561 bits (6639), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1305/1355 (96%), Positives = 1320/1355 (97%), Gaps = 4/1355 (0%) Query: 1 MSVTKAPNTPPGAQPQQTPQQDRGRGPREPRGPRRAEPASEAAPP---VRNPLPPVTFPE 57 MSVTKAP P AQPQ+ PQQ+R RG R+ RGPRR + A+EAAP +RNPLPPVTFPE Sbjct: 1 MSVTKAPTPAPAAQPQKNPQQERARGQRDARGPRRTDSAAEAAPAPAPLRNPLPPVTFPE 60 Query: 58 ELPVSGRRHEIAEALRRHQVIIVSGETGSGKTTQLPKICLELGRGAKGLIGHTQPRRIAA 117 ELPVSGRRHEIA ALR HQVIIVSGETGSGKTTQLPKICLELGRG KGLIGHTQPRRIAA Sbjct: 61 ELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKGLIGHTQPRRIAA 120 Query: 118 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII 177 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII Sbjct: 121 SSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTII 180 Query: 178 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGRELKGELVPAPVI 237 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGRE+KGE+VPAPVI Sbjct: 181 IDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGREVKGEIVPAPVI 240 Query: 238 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD 297 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD Sbjct: 241 EVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVD 300 Query: 298 ELARIGSGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR 357 ELARIG+GDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR Sbjct: 301 ELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARR 360 Query: 358 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV 417 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV Sbjct: 361 IVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRV 420 Query: 418 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA 477 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA Sbjct: 421 AAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIA 480 Query: 478 DGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV 537 DGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV Sbjct: 481 DGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAV 540 Query: 538 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN 597 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN Sbjct: 541 SVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCREN 600 Query: 598 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAAATYDQLHLALLTGLLGNVGFKSDDDAQY 657 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEA ATYDQLHLALLTGLLGNVGFKS+DDAQY Sbjct: 601 FLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLGNVGFKSEDDAQY 660 Query: 658 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW 717 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW Sbjct: 661 LGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSW 720 Query: 718 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGNINPVEAREIFIRDALVGGDFETRAP 777 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYG INP EAREIFIRDALVGGDFETRAP Sbjct: 721 GEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRDALVGGDFETRAP 780 Query: 778 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPQDICNGVDFEKWHKQATAAD 837 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIP DICNGVDFEKWHK+ATAAD Sbjct: 781 FFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVDFEKWHKEATAAD 840 Query: 838 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN 897 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN Sbjct: 841 PKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALN 900 Query: 898 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKTFGRGNLI 957 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERK FGRGNLI Sbjct: 901 QVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKAFGRGNLI 960 Query: 958 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA 1017 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA Sbjct: 961 DAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQA 1020 Query: 1018 RQQFQKLAEQVAIAPREDEDSAAPLPAAAAGKGGAT-IATPAAPASVGEYSNLTSWSFGE 1076 RQQFQKLAEQVAIAPREDED+AAP PAAA KGG + AAPASVGEYSNLTSWSFGE Sbjct: 1021 RQQFQKLAEQVAIAPREDEDNAAPSPAAATSKGGTSAAPAAAAPASVGEYSNLTSWSFGE 1080 Query: 1077 LPELLEITRGSGKQAQTLIGFPALVDRLTHCDLEVFDDPTEAARFHYAGLRRLFALQMKE 1136 LPELLEITRGSGKQAQTLIGFPALVDR THCDLEVFDDP EAARFHYAGLRRLFALQMKE Sbjct: 1081 LPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLRRLFALQMKE 1140 Query: 1137 QLKYLEKNIPGLQQMGMQFMALGTQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG 1196 QLKYLEKNIPGLQQMGMQFMALG+QEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG Sbjct: 1141 QLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEG 1200 Query: 1197 KARLGLLVNEIARLCGLILAEYHSLPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY 1256 KARLGLLVNEIARLCG ILAEYH+LPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY Sbjct: 1201 KARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDY 1260 Query: 1257 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRGLKDRAGRADPKMTEFR 1316 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQR LKDRAGRADPKMTEFR Sbjct: 1261 GNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGRADPKMTEFR 1320 Query: 1317 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 1351 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR Sbjct: 1321 WMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 1355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,980,046 Number of extensions: 165173 Number of successful extensions: 609 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 607 Number of HSP's successfully gapped: 1 Length of query: 1351 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1254 Effective length of database: 1,160,575 Effective search space: 1455361050 Effective search space used: 1455361050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)