BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3420.p
         (489 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   421   e-119
gi|300310691|ref|YP_003774783.1| outer membrane drug efflux lipo...    59   7e-10

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/451 (49%), Positives = 314/451 (69%), Gaps = 5/451 (1%)

Query: 35  IEDPLLARPPELDEGKLLPGDAQALACDGRFAVPTAPLTLGDAIDLGLCHHAQVKASWAR 94
           I DPLLARPP+L  G+LLPGD Q + C     V    L+L DAID  LC   Q++A+WA 
Sbjct: 35  IGDPLLARPPDLITGRLLPGDDQRVECAASPYVAGKALSLADAIDQALCQQPQIQAAWAA 94

Query: 95  IKVQAAQKGEARAAYLPSINAGLRYQQERVRQPDSLLPLDSQRKTRSQYYTLTWRLLDFG 154
           IK+QAAQ GEARA YLP++ +G      ++           +R   + Y TLTWRLLDFG
Sbjct: 95  IKLQAAQLGEARAGYLPTVTSGA----SKLNSATQYEGGSGRRSLTTLYATLTWRLLDFG 150

Query: 155 GRSANLRAADALLDAALASHDAILQKTMTSVIAAYYDVQTAAANRQARELNERLARQIME 214
           GRSAN RAADA+L +ALASHDA +QK + SV+A+YY+VQ+++A++QARE +++LARQ++E
Sbjct: 151 GRSANQRAADAMLQSALASHDAAVQKALASVVASYYEVQSSSASQQAREKSQQLARQLLE 210

Query: 215 TTHKRAERGMAARSDLLQVQTSLSKAELEHARAIGQHEKALVTLSISLGLRGQGPHLQVP 274
           T  +R +RG+ +  + LQ +T L+KAELE ARA GQH+KA   L+ ++GL  +   + V 
Sbjct: 211 TAIRREQRGVGSLPETLQARTFLAKAELEQARASGQHKKAQAMLAAAMGLLREAQDVPVL 270

Query: 275 IDSPDSAIEAGQIAQDLVQWMETARQQHPALRASRAQLASSREKLAATRAEGLPSLDFSH 334
              P+       + Q+L  W++ ARQ HPA+ A+RAQL ++REKL   R+EG+P+LD S 
Sbjct: 271 TLVPEQEEYPDGLEQNLPAWLQAARQYHPAILAARAQLEAAREKLQVARSEGMPTLDLSA 330

Query: 335 GYYVNGRPNQGSASTQTRETVSALSLNFPLFDGFSHTYKVRNAQAQIDLREAELLEAEGQ 394
             Y NGRPNQ + +   RE +  L+L  P+F+GF+  YKV  AQAQI+ REAEL E + Q
Sbjct: 331 RQYANGRPNQ-AGNRGDRERMVGLNLTVPIFEGFARDYKVGGAQAQIEAREAELQEVQTQ 389

Query: 395 VISELANAYAENEAAQRNLVSSQRLLDSAKMALEDVQRKYERGLSDIIGILNVQAALADA 454
           V+ ++A+ YAE   A  +L SS+RLLD+A+ A++ V+RKY+ G +DI+ +LN Q AL++A
Sbjct: 390 VLGDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEMLNAQTALSEA 449

Query: 455 SQERIRALAEWRSARLRLLASAGELGRTRVA 485
            QER++A+++WRSARLRLLA+AG +GR  VA
Sbjct: 450 DQERVKAMSDWRSARLRLLANAGRMGRWAVA 480


>gi|300310691|ref|YP_003774783.1| outer membrane drug efflux
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 177/418 (42%), Gaps = 49/418 (11%)

Query: 73  TLGDAIDLGLCHHAQVKASWARIKVQAAQKGEARAAYLPSINAGLRYQQERVRQPDSLLP 132
           +L   I L L ++  ++ +   I+   AQ G  RAA  PSI A     +   R P  L  
Sbjct: 74  SLQQVIALALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAAT--SETASRTPGDLSS 131

Query: 133 LDSQRKTRSQYYTLTWRL--LDFGGRSANLRAADALLDAALASHDAILQKTMTSVIAAYY 190
             S   +RS   TL +    LD  GR  +L+  +  L + L++ +A  + T  S+IA   
Sbjct: 132 TGSALTSRSYTATLGFSAYELDLFGRVRSLK--EQALQSFLSTAEA-RRSTQISLIA--- 185

Query: 191 DVQTAAANRQARELNERLARQIMET-------THKRAERGMAARSDLLQVQTSLSKAELE 243
           +V TA     + +   RLA+  +E+       T +  E G ++   L Q QTS+  A ++
Sbjct: 186 EVATAWLTLASDQDRLRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARVD 245

Query: 244 ---HARAIGQHEKALVTL---SISLGLRGQG-PHLQVPIDSPDSAIEAGQIAQDLVQWME 296
              +   + Q   ALV L    +   L  QG P  ++   SP + I  G +  DL+Q   
Sbjct: 246 VESYTAQVDQDRNALVLLVGKDLPTALLPQGLPDTRLAAASPLATIPPG-LPSDLLQRRA 304

Query: 297 TARQQHPALRASRAQLASSREKLAATRAEGLPSLDFSHGYYVNGRPNQGSASTQTRETVS 356
              Q    LRA+ A        + A RA   PS+  +         N G+AS +      
Sbjct: 305 DIVQAERDLRAANA-------NIGAARAAFYPSITLTV--------NAGTASARLAGLFK 349

Query: 357 ALS--------LNFPLFDGFSHTYKVRNAQAQIDLREAELLEAEGQVISELANAYAENEA 408
             S        ++ P+FDG ++   +  A    D+  A+  +A      E+++A A+   
Sbjct: 350 GGSGSWSFVPQISLPIFDGGANQANLDIATVSRDISVAQYEKAIQTAFREVSDALAQRNT 409

Query: 409 AQRNLVSSQRLLDSAKMALEDVQRKYERGLSDIIGILNVQAALADASQERIRA-LAEW 465
             R L + + L+ ++  A    Q +Y  G+   + +L+ Q  L  A +  I   L+ W
Sbjct: 410 LGRQLQAQEALVQASDEAFRLSQARYHSGVDSYLTVLDSQRTLYSAQKNLIGTQLSRW 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,356,170
Number of extensions: 52233
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 8
Length of query: 489
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,198,455
Effective search space: 479382000
Effective search space used: 479382000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)