BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3418.p (720 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1125 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 278 1e-75 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 273 4e-74 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 234 2e-62 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 223 5e-59 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/711 (75%), Positives = 626/711 (88%), Gaps = 4/711 (0%) Query: 2 NDQENHPETPDSGLLCLLMMARLHDIAADPHQLRHEFGREPFTIQTLLLAARKLGLSARC 61 D+++ P DSGL CL+MMARLH IAAD QL+H FGR+PF +QT+LLAAR LG++A+C Sbjct: 4 TDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMTAKC 63 Query: 62 VRQDPARLERMPLPAIAVDRDGKFFLIGKIDRSQAI----WRILVQRPGERPAIMLRPAF 117 + Q RLER PLPAI +DR+G+FF++ K++++Q RILVQ+PG+ P ++ + F Sbjct: 64 LHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQRDF 123 Query: 118 DECWSGQVIFMTSKASFAGSMSKFDFTWFIPAVIKYRKALGEVLLISLALQLIGLCTPLF 177 + WSGQVI TSKAS+A S+FDF+WFIPAV+KYRK L EVLLISL LQLIGL TP+F Sbjct: 124 EALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMF 183 Query: 178 FQVVMDKVLVNHAMKTLNVIAIGLIAATLFEAILGGIRTALFSHTSSKIDVELGSKLFAH 237 FQVVMDKVLVNHAM TLNVIA+GLIAAT+FEA+L GIRTA+F++ SSKIDVELGS+LF+H Sbjct: 184 FQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSH 243 Query: 238 LLSLPITYFQSRRAGDSIARIRELENIRSFLTSNAMTLLLDLVFSFVFLGVMLWYSVTLS 297 LLSLP++YFQ RRAGDSIAR+RELENIRSFLT NAMTL+LD++FSFVFLGVMLWYSV+LS Sbjct: 244 LLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLS 303 Query: 298 LIVLASIPLYLGLSFVFTPILRARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQ 357 LIVLASIP+Y+ LS VFTP+LR RL+DKFNKSAENQ+FLVE+LTGMDT+K++AVEPRWQQ Sbjct: 304 LIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQ 363 Query: 358 KWDKQLAAYVSAGLSTANIGLLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFN 417 KWDKQLAAYV+AGL+T NI LLASG+V LVSKLVT IMWLGA LV+ +++VGELVAFN Sbjct: 364 KWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFN 423 Query: 418 MLAGQVAAPVLRLAQLWNDFQQVGISMSRLGDVLDTRPEVTGKKTRLPRLSGAIIFDQVS 477 MLAGQVA+P+LRLAQLWNDFQQ+GISMSRL DVLD R EV G +TRLPR++GAI FD VS Sbjct: 424 MLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISFDLVS 483 Query: 478 FRYRPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLA 537 FRYRPET EV+R L+L IRPGEV+GIVGRSGSGKSTL KLVQRLY+C+ G++ +DGQD+A Sbjct: 484 FRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIA 543 Query: 538 VIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEA 597 +IDTASLRQQIGVVLQEN LFSRSIRDNIAL DPS PIE +I AAKLAGAH+FICELPE Sbjct: 544 IIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEG 603 Query: 598 YDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAG 657 YDT+VGE G+GLSGGQRQRIAIARALI+NP ILIFDEATSALDYESEKIIQDNMRQICAG Sbjct: 604 YDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAG 663 Query: 658 RTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQ 708 RTVLIIAHRLSAVRDA RIIV+++G++ ESG H+EL+ PGG+YAHLH LQ Sbjct: 664 RTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 278 bits (711), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 180/509 (35%), Positives = 281/509 (55%), Gaps = 12/509 (2%) Query: 203 AATLFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-REL 261 A L A+ +R +F+ + + + ++F HL +L + + +R+ G I R Sbjct: 90 ALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGT 149 Query: 262 ENIRSFLTSNAMTLLLDLV-FSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRA 320 + S ++ ++L L+ + V ++ Y V S+I ++ Y+ + T Sbjct: 150 RGVSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTH 209 Query: 321 --RLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYVSAGL-STANIG 377 R ++ + A +A ++SL +T+K E +++D+ L Y A + S +++ Sbjct: 210 FRRTMNELDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLS 267 Query: 378 LLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQLWNDF 437 LL +G ++++ VT I+W VID +T+G++V N Q+ P+ L L+ + Sbjct: 268 LLNTGQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREI 326 Query: 438 QQVGISMSRLGDVLDTRPEVTGKKTRLP-RLSGAII-FDQVSFRYRPETSEVLRALTLNI 495 +Q M RL +L+ EV P + GA + FD V F Y ++L + + Sbjct: 327 KQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDFTV 385 Query: 496 RPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQEN 555 + G +VG SGSGKSTL++L+ R Y D G + IDGQDL + ASLRQ IG+V Q+ Sbjct: 386 QAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDT 445 Query: 556 MLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQ 615 +LF+ +I NIA P E ++AAAK A H+FI LP+ Y ++VGE G LSGG++Q Sbjct: 446 VLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQ 505 Query: 616 RIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHR 675 R+AIAR L+ +PAILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A + Sbjct: 506 RVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQ 565 Query: 676 IIVLDKGQIVESGRHEELLRKPGGLYAHL 704 I+VLD G+IVE G H LL GGLYA + Sbjct: 566 ILVLDHGRIVERGTHAGLL-MAGGLYAQM 593 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 273 bits (697), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 190/544 (34%), Positives = 295/544 (54%), Gaps = 21/544 (3%) Query: 172 LCTPLFFQVVMDKVLV---NHAMKTLNVIAI---GLIAATLFEAILGGIRTALFSHTSSK 225 L P +MD VL+ N A ++ + GL+ A + LG RT + + S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 226 IDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-RELENIRSFLTSNAMTLLLDLVFSFV 284 I +L + ++HLL L YF +R GD +ARI E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 285 FLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNK----SAENQAFLVESL 340 +++ + L+L+ L +P + V +R RL F K +E L +++ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWMIHV----VRDRLRHGFEKIDRIWSEVTNVLADTI 372 Query: 341 TGMDTIKSLAVEPRWQQKWDKQLAAYVSAGLSTANIGLLASGSVSLVSKLVTAAIMWLGA 400 G+ +K+ A E R ++ + + I L + +V+ ++++ + G Sbjct: 373 PGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGI 432 Query: 401 TLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSRLGDVLD---TRPEV 457 V Q+TVG L AF + + ++++ + Q+ R+ D+LD + PE Sbjct: 433 WQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE- 491 Query: 458 TGKKTRLPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKL 517 L ++ GAI + FRY V+R ++L+I PGE++G+VG SGSGKST+ L Sbjct: 492 PANPVHLEKVQGAIEVRNIGFRY--GNRAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNL 549 Query: 518 VQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEA 577 + R Y G + IDG D+ + + R+ IG+VLQE LF +I +NIA P E Sbjct: 550 ICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREE 609 Query: 578 VIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATS 637 +IAAA+ A AHEFI LP+ YD+LVGE G LSGG+RQRI+IARAL+ +P ILI DEATS Sbjct: 610 IIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATS 669 Query: 638 ALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKP 697 ++D +EK IQ + + GRT + IAHRLS +R A R++VLD+GQ+VE G HEEL+ + Sbjct: 670 SVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMARE 729 Query: 698 GGLY 701 G Y Sbjct: 730 GHYY 733 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 234 bits (597), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 189/583 (32%), Positives = 306/583 (52%), Gaps = 29/583 (4%) Query: 146 FIPAVIKYRKALGEVLLISLALQLIGLCTPLFFQVVMDKVLVNHAMKTLNVIAIGLIAAT 205 +P + Y+K L + L P F+ ++D K+ + I + +A Sbjct: 39 LLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALF 98 Query: 206 LFEAILG---GIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSIARIRELE 262 ILG +R + S ++ +L S ++AH+++ +F++ + G+ ++R+ Sbjct: 99 GVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDT 158 Query: 263 NIRSFLTSNAMTLLLDLVFSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARL 322 + L ++++ L F+ ML+++ L SI + + + V + R Sbjct: 159 TLIQTLVGTSISMALRNALLFIGGMSMLFFTSAR----LTSIIIVMLAAVVLPIVFYGRR 214 Query: 323 DDKFNKSAENQ-----AFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYVSAGLSTANIG 377 K +++++++ A E L M T+++ E + ++ A V TA Sbjct: 215 VRKLSRASQDRVADASAMAGEILNAMPTVQAFTHE----EIEARRFAQSVERAFGTAMER 270 Query: 378 LLASGSVSLVSKLVTAA----IMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQL 433 + A +++V+ L+ ++WLGA V++ ++ GEL F + A VA + L+++ Sbjct: 271 VRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEV 330 Query: 434 WNDFQQVGISMSRLGDVLDTRPEVTG---KKTRLPRLS--GAIIFDQVSFRY--RPETSE 486 D Q+ + RL D+L V + PR + A+ V F Y RP Sbjct: 331 MGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPS 390 Query: 487 VLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQ 546 L L+L ++PGE V IVG SG+GK+TL +L+ R Y +G++++DG D+ +D +LR Sbjct: 391 -LTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRG 449 Query: 547 QIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHG 606 IG+V Q+ ++FS + +NI P VIAAA++A AHEFI LP +Y +GE G Sbjct: 450 AIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGSYACFLGERG 509 Query: 607 TGLSGGQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHR 666 LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + GRT L+IAHR Sbjct: 510 VRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHR 569 Query: 667 LSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQM 709 L+ V+ A RIIVL+ G+IVESG H EL+ + GLYA L LQ Sbjct: 570 LATVQRADRIIVLEHGRIVESGTHAELVARD-GLYAGLAALQF 611 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 223 bits (568), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 169/568 (29%), Positives = 291/568 (51%), Gaps = 12/568 (2%) Query: 153 YRKALGEVLLISLALQLIGLCTPLFFQVVMDKVLVNHAMKTLNVIAIGLIAATLFEAILG 212 Y+K L + + P FQV++DK V +L ++ + +I I Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Query: 213 GIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSI-ARIRELENIRSFLTSN 271 + + + S++I EL ++FA +L LP+ ++ + G I + + E++ I +T Sbjct: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 Query: 272 AMTLLLDLVFSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNKSAE 331 ++L + L +L+ + L+++ L +PL + L+ D +AE Sbjct: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAE 195 Query: 332 NQAFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYVSAGLSTANIGLLASGSVSL-VSKL 390 + E+ IK + +++++++ + L + + + A+ S ++ +++L Sbjct: 196 MTQVIEETTRAQQVIKIFGGQDYEKERFNRR-----AENLRSYTMRMTAAFSSTVPITQL 250 Query: 391 VTAAIMWLGATLVIDQ----QLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSR 446 +TA + + + + Q Q+TVG V+F + P+ +LA++ Q+ + Sbjct: 251 MTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEE 310 Query: 447 LGDVLDTRPEVTGKKTRLPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGR 506 + ++D E + R +G + F +V F Y L+ + L++ GE + VG Sbjct: 311 VYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGM 370 Query: 507 SGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNI 566 SG GKSTL L+ Y C G++ +DG+D+ I SLRQQI +V Q +LF ++ NI Sbjct: 371 SGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAANI 430 Query: 567 ALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISN 626 A D + V AA + A + + LPE T +G++G+ LSGGQRQR+AIARA+ + Sbjct: 431 AYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKD 490 Query: 627 PAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVE 686 ILI DEATSALD ESE+ +Q + ++ GRT +IAHRLS + A RI+VL GQI E Sbjct: 491 APILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 Query: 687 SGRHEELLRKPGGLYAHLHGLQMTQGAA 714 G H+ LL + G+YA+L+ LQ +Q A+ Sbjct: 551 IGTHQALLEQE-GVYANLYRLQFSQQAS 577 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,074,245 Number of extensions: 83072 Number of successful extensions: 744 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 584 Number of HSP's successfully gapped: 131 Length of query: 720 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 628 Effective length of database: 1,184,250 Effective search space: 743709000 Effective search space used: 743709000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 134 (56.2 bits)