BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3417.p (1368 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312190|ref|YP_003776282.1| hemolysin-type calcium binding ... 741 0.0 gi|300312185|ref|YP_003776277.1| calcium binding secreted hemoly... 574 e-164 gi|300312186|ref|YP_003776278.1| calcium binding secreted hemoly... 565 e-161 gi|300311899|ref|YP_003775991.1| hemolysin-type calcium binding ... 483 e-137 >gi|300312190|ref|YP_003776282.1| hemolysin-type calcium binding protein [Herbaspirillum seropedicae SmR1] Length = 1139 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/712 (55%), Positives = 496/712 (69%), Gaps = 4/712 (0%) Query: 657 GNDSLYGGLGNDTLDGGDDNDLIFGEAGNDTLFGSAGEDELDGGAGNDSVDGGAGIDKIF 716 G D+L G G+DTL GG ND +FG GND LFG G+D+L GG G D +DGGAG D++F Sbjct: 432 GKDTLVGTTGDDTLWGGAGNDTLFGREGNDRLFGEDGDDQLLGGEGFDLLDGGAGDDQLF 491 Query: 717 GGVGNDTLWGGSGNDILVGFTPSNDSKQSLSAGETDDDTMYGGTGDDFMVGGFGNDQMWG 776 GG+GND +WGG G+D ++G SN + + L AG+TDDD M+GG G D M GG GNDQMWG Sbjct: 492 GGLGNDQMWGGDGDDTMMGSDVSN-TGRPLPAGQTDDDIMFGGAGKDGMFGGAGNDQMWG 550 Query: 777 GIGNDEAQGGVGDDQLYGEEGNDRLFGGAGNDVIYGGTGDDIIVGGAASNEAALAAGVSD 836 G G+D G GDD+LYGE GND ++GG GNDVI GG GDD+I G Sbjct: 551 GDGDDGLYGNEGDDKLYGEAGNDHIYGGKGNDVIQGGDGDDLIYGDDMEYFWMQPDTTGG 610 Query: 837 SNFLYGGAGNDIIIGGIGNDYIDGGAGADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTV 896 + LYGGAGND + GG GND +DGG+G D + GG GDD Y+V+ D I E A +G+DTV Sbjct: 611 DDLLYGGAGNDSLFGGSGNDVLDGGSGNDSLVGGLGDDTYVVDGAGDTIREDADQGHDTV 670 Query: 897 VASANTMLAANVDELRLMEGGSFNGTGNSGANKLIGNSQANILDGVTGADIMIGGQGNDI 956 VAS + L N+++LRL EGG FNGTGN+ N + GNSQ NILDG GAD ++GG GND Sbjct: 671 VASCSYTLGRNLEDLRLAEGGQFNGTGNAQDNLITGNSQDNILDGGRGADTLMGGTGNDS 730 Query: 957 YYVDDLDDRVIELAGEGNDTVLSSISHTLGAQIENLGLLDFSKPEKGIADGVDILVYGYP 1016 Y+VDD++D+V+E AGEG DTV S IS TLGA +ENL LLD + P+ I +G D+LVYGYP Sbjct: 731 YFVDDVNDKVVEQAGEGVDTVFSRISTTLGANLENLTLLDSATPQHEIVNGRDMLVYGYP 790 Query: 1017 KANELDYMQGNAVRDYAGTCALTSIANLAIQANQNLSEAQVVQRAIDNQWCVTDSTVSDY 1076 ELDY QG+AV Y GTC TS+ NL + A ++EAQ V+RAI N WCVT + Sbjct: 791 HYAELDYSQGDAVAGYTGTCGETSVVNLCLMAGLAVTEAQAVKRAIANGWCVTSG---ES 847 Query: 1077 ERGGSNYLGQRALLDSYGIRNGLIQGYNEQGIANLIKGGRGVIIAVNAGKLWGESAYLDG 1136 + GGSN Q ALL SYGIR GY+E+ + ++K GRG +++VNAGKLW + Sbjct: 848 QLGGSNQYDQVALLASYGIRAKAGYGYDEKALVKVLKEGRGALVSVNAGKLWDNPGAVQL 907 Query: 1137 GGVNHVVTVTGVACDAATGAINGFYIADSGRGLVSDMTRYLSLADFRRNANVANAYSIYT 1196 G NHV+TVTGV CD TG GF+IADSGRG D RYLS + R+ A+V + Y + T Sbjct: 908 GNGNHVITVTGVVCDPGTGEAQGFFIADSGRGRPEDACRYLSKDELRKVADVTDGYMVAT 967 Query: 1197 IDPIKLRNENIDGTGNELANIITGNRGDNILTGGRGNDTIIGQAGNDTYRFSRGDGIDTI 1256 +DPIK+ NEN+D TGNEL N+ITGNRG N++ GGRGNDT+IG AGNDTY F+RGDG D I Sbjct: 968 VDPIKVPNENLDATGNELDNVITGNRGANVIRGGRGNDTLIGGAGNDTYVFARGDGQDVI 1027 Query: 1257 IDSDATQGNIDVLELSGIHQQNLWFRHVGDDLQINVMGTADQIVVKGWYGSGADESTGRI 1316 D DAT+GNID L+LS + Q NLWF G+DL+I+V+G D+I +K WY G+ S I Sbjct: 1028 ADQDATRGNIDTLQLSDLRQTNLWFSQSGNDLRIDVLGGNDRITIKDWYQGGSSGSDNHI 1087 Query: 1317 ERIKTADGLNLHDTDVEQFVQAMAGFAAPSAAQTSWTNGQTSNGRILMTVTH 1368 ERI+TADG L+D+DV++ VQAMA FA P A Q+ WT GQTS G++L+TVTH Sbjct: 1088 ERIRTADGNTLYDSDVDKLVQAMASFAPPPALQSEWTPGQTSQGKVLLTVTH 1139 Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 206/384 (53%), Gaps = 73/384 (19%) Query: 561 TGHDLLDGGTGDDMLFAEAGNDTLIGGEGNDELQAGDGNDALY---------GGAGHDKL 611 +G D L G TGDD L+ AGNDTL G EGND L DG+D L GGAG D+L Sbjct: 431 SGKDTLVGTTGDDTLWGGAGNDTLFGREGNDRLFGEDGDDQLLGGEGFDLLDGGAGDDQL 490 Query: 612 FGQAGDDTLYGGDGNDVLVGFTPSNDSKQTLASGESDNDTLRGGRGNDSLYGGLGNDTLD 671 FG G+D ++GGDG+D ++G SN + + L +G++D+D + GG G D ++GG GND + Sbjct: 491 FGGLGNDQMWGGDGDDTMMGSDVSN-TGRPLPAGQTDDDIMFGGAGKDGMFGGAGNDQMW 549 Query: 672 GGDDNDLIFGEAGNDTLFGSAGEDELDGGAGNDSVDGGAGIDKIFG------------GV 719 GGD +D ++G G+D L+G AG D + GG GND + GG G D I+G Sbjct: 550 GGDGDDGLYGNEGDDKLYGEAGNDHIYGGKGNDVIQGGDGDDLIYGDDMEYFWMQPDTTG 609 Query: 720 GNDTLWGGSGNDILVGFTPSNDSKQSLSAGETDDDTMYGGTGDDFMVGGFGNDQMWGGIG 779 G+D L+GG+GN D+++GG+G+D + GG GND + GG+G Sbjct: 610 GDDLLYGGAGN-----------------------DSLFGGSGNDVLDGGSGNDSLVGGLG 646 Query: 780 NDEAQGGVGDDQLYGEEGNDRLFGGAGNDVIY-GGTGDDIIVGGAASNEAALAAGVSDSN 838 +D + GAG+ + G D +V AS L + D Sbjct: 647 DDT-----------------YVVDGAGDTIREDADQGHDTVV---ASCSYTLGRNLEDLR 686 Query: 839 FLYGG-------AGNDIIIGGIGNDYIDGGAGADKMEGGKGDDIYIVNSVNDVILEHAGE 891 GG A +++I G ++ +DGG GAD + GG G+D Y V+ VND ++E AGE Sbjct: 687 LAEGGQFNGTGNAQDNLITGNSQDNILDGGRGADTLMGGTGNDSYFVDDVNDKVVEQAGE 746 Query: 892 GYDTVVASANTMLAANVDELRLME 915 G DTV + +T L AN++ L L++ Sbjct: 747 GVDTVFSRISTTLGANLENLTLLD 770 Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 129/322 (40%), Positives = 179/322 (55%), Gaps = 34/322 (10%) Query: 517 GNDLMGGSVRNDTLWGGTGDDALWGYEGNDTLYGEEGNDELIGGTGHDLLDGGTGDDMLF 576 G D + G+ +DTLWGG G+D L+G EGND L+GE+G+D+L+GG G DLLDGG GDD LF Sbjct: 432 GKDTLVGTTGDDTLWGGAGNDTLFGREGNDRLFGEDGDDQLLGGEGFDLLDGGAGDDQLF 491 Query: 577 AEAGNDTLIGGEGNDELQAGD----GNDALYGGAGHDKLFGQAGDDTLYGGDGNDVLVGF 632 GND + GG+G+D + D G G D +FG AG D ++GG GND + Sbjct: 492 GGLGNDQMWGGDGDDTMMGSDVSNTGRPLPAGQTDDDIMFGGAGKDGMFGGAGNDQMW-- 549 Query: 633 TPSNDSKQTLASGESDNDTLRGGRGNDSLYGGLGNDTLDGGDDNDLIFGE---------- 682 D L E D D L G GND +YGG GND + GGD +DLI+G+ Sbjct: 550 --GGDGDDGLYGNEGD-DKLYGEAGNDHIYGGKGNDVIQGGDGDDLIYGDDMEYFWMQPD 606 Query: 683 --AGNDTLFGSAGEDELDGGAGNDSVDGGAGIDKIFGGVGNDT-LWGGSGNDILVGFTPS 739 G+D L+G AG D L GG+GND +DGG+G D + GG+G+DT + G+G+ I Sbjct: 607 TTGGDDLLYGGAGNDSLFGGSGNDVLDGGSGNDSLVGGLGDDTYVVDGAGDTIREDADQG 666 Query: 740 NDS---KQSLSAGETDDDT------MYGGTG---DDFMVGGFGNDQMWGGIGNDEAQGGV 787 +D+ S + G +D + GTG D+ + G ++ + GG G D GG Sbjct: 667 HDTVVASCSYTLGRNLEDLRLAEGGQFNGTGNAQDNLITGNSQDNILDGGRGADTLMGGT 726 Query: 788 GDDQLYGEEGNDRLFGGAGNDV 809 G+D + ++ ND++ AG V Sbjct: 727 GNDSYFVDDVNDKVVEQAGEGV 748 Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 173/352 (49%), Gaps = 61/352 (17%) Query: 475 NNSNRDSLIGTDGDDSFNANYYAAYNGIYFNTDLLVKFYAGGGNDLMGGSVRNDTLWGGT 534 +NS +D+L+GT GDD+ + G GND + G ND L+G Sbjct: 429 DNSGKDTLVGTTGDDTL---------------------WGGAGNDTLFGREGNDRLFGED 467 Query: 535 GDDALWGYEGNDTLYGEEGNDELIGGTGHDLLDGGTG----------------------D 572 GDD L G EG D L G G+D+L GG G+D + GG G D Sbjct: 468 GDDQLLGGEGFDLLDGGAGDDQLFGGLGNDQMWGGDGDDTMMGSDVSNTGRPLPAGQTDD 527 Query: 573 DMLFAEAGNDTLIGGEGNDELQAGDGNDALYGGAGHDKLFGQAGDDTLYGGDGNDVLVG- 631 D++F AG D + GG GND++ GDG+D LYG G DKL+G+AG+D +YGG GNDV+ G Sbjct: 528 DIMFGGAGKDGMFGGAGNDQMWGGDGDDGLYGNEGDDKLYGEAGNDHIYGGKGNDVIQGG 587 Query: 632 ----FTPSNDSKQTLASGESD--NDTLRGGRGNDSLYGGLGNDTLDGGDDNDLIFGEAGN 685 +D + ++ +D L GG GNDSL+GG GND LDGG ND + G G+ Sbjct: 588 DGDDLIYGDDMEYFWMQPDTTGGDDLLYGGAGNDSLFGGSGNDVLDGGSGNDSLVGGLGD 647 Query: 686 DTLFGSAGEDEL--DGGAGNDSVDGGAGIDKIFGGVGNDTLWGGSGNDILVGFTPSNDSK 743 DT D + D G+D+V A G D G F + +++ Sbjct: 648 DTYVVDGAGDTIREDADQGHDTVV--ASCSYTLGRNLEDLRLAEGGQ-----FNGTGNAQ 700 Query: 744 QSLSAGETDDDTMYGGTGDDFMVGGFGNDQMWGGIGNDEA--QGGVGDDQLY 793 +L G + D+ + GG G D ++GG GND + ND+ Q G G D ++ Sbjct: 701 DNLITGNSQDNILDGGRGADTLMGGTGNDSYFVDDVNDKVVEQAGEGVDTVF 752 >gi|300312185|ref|YP_003776277.1| calcium binding secreted hemolysin protein [Herbaspirillum seropedicae SmR1] Length = 984 Score = 574 bits (1480), Expect = e-164, Method: Compositional matrix adjust. Identities = 304/586 (51%), Positives = 399/586 (68%), Gaps = 10/586 (1%) Query: 784 QGGVGDDQLYGEEGNDRLFGGAGNDVIYGGTGDDIIVGGAASNEAALAAGVSDSNFLYGG 843 QGG G+D L+ G + + G G+DVIYGG GDD +VGG S ALA G +D++ LYGG Sbjct: 408 QGGAGNDVLFATNGEE-INGNGGDDVIYGGDGDDTLVGGTYS---ALARGETDNDVLYGG 463 Query: 844 AGNDIIIGGIGNDYIDGGAGADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTVVASANTM 903 AG D + GG+GND +DGG G D+M GG GDDIY+V+S D + E+A G DTV+A +T Sbjct: 464 AGKDSLSGGVGNDLLDGGTGDDRMYGGAGDDIYVVDSAGDGVFENADAGRDTVLAGMSTT 523 Query: 904 LAANVDELRLMEGGSFNGTGNSGANKLIGNSQANILDGVTGADIMIGGQGNDIYYVDDLD 963 L NV++LRL+EGGS+NGTGN N+L GNSQ NILDG+ GAD M+GGQGND Y+VD++ Sbjct: 524 LGENVEDLRLLEGGSYNGTGNFLDNRLTGNSQDNILDGLAGADTMMGGQGNDRYFVDNVG 583 Query: 964 DRVIELAGEGNDTVLSSISHTLGAQIENLGLLDFSKPEKGIADGVDILVYGYPKANELDY 1023 D+VIE AGEG DTV S++S TLGA +ENL L+D P G G D L+YG PK+ +DY Sbjct: 584 DQVIEEAGEGIDTVYSTVSMTLGANVENLTLMDARTPVHGEIYGQDALIYGTPKSYLMDY 643 Query: 1024 MQGNAVRDYAGTCALTSIANLAIQANQNLSEAQVVQRAIDNQWCVTDSTVSDYERGGSNY 1083 QG+A + GTC +TS+AN+ A N++E + +QRAID WC +D ++ RGG Sbjct: 644 RQGDARPGFLGTCGVTSVANMLTMAGVNVTEKETLQRAIDRDWCDSDPSLPITLRGGVTC 703 Query: 1084 LGQRALLDSYGIRNGLIQGYNEQGIANLIKGGRGVIIAVNAGKLWGESAYLDGGGVN-HV 1142 L+ S+G+ + Y+E + L+KGG V + +A S YL G V H Sbjct: 704 NDLAELMGSFGVAGEVDYRYDEARLVKLLKGGHVVTLCADAAVFRDMSGYLAGKRVGFHA 763 Query: 1143 VTVTGVACDAATGAINGFYIADSGRGLVSDMTRYLSLADFRRNANVANAYSIYTIDPIKL 1202 V V+GVAC A TG + GFYI DSG G S+M R+LS+ D RN + + IY++DP KL Sbjct: 764 VAVSGVACSAKTGEVLGFYITDSGPGRYSEMNRFLSVGDL-RNMDAHESALIYSVDPAKL 822 Query: 1203 RNENIDGTGNELANIITGNRGDNILTGGRGNDTIIGQAGNDTYRFSRGDGIDTIIDSDAT 1262 + + TGNEL NI+ GN+ +N+LTG +GNDT+ GQAGNDTY F +GDG D ++D DAT Sbjct: 823 LHRDSSATGNELDNILVGNQDNNLLTGAKGNDTLTGQAGNDTYVFGKGDGRDLVVDQDAT 882 Query: 1263 QGNIDVLELSGIHQQNLWFRHVGDDLQINVMGTADQIVVKGWYGSGADESTGRIERIKTA 1322 GNID ++ S Q NLWF VG DLQI+V+G+ DQ+ VK WY +GAD R+ERIKTA Sbjct: 883 AGNIDTIKFSDARQTNLWFSQVGKDLQIDVLGSTDQVTVKDWY-AGADN---RVERIKTA 938 Query: 1323 DGLNLHDTDVEQFVQAMAGFAAPSAAQTSWTNGQTSNGRILMTVTH 1368 DG L+D+DV++ VQAMA F P+A QTSWT+GQTS G++L+TVTH Sbjct: 939 DGKTLYDSDVDKLVQAMASFDPPAATQTSWTDGQTSKGKVLLTVTH 984 Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 110/313 (35%), Positives = 145/313 (46%), Gaps = 60/313 (19%) Query: 335 RTFRILNNANLALTATQLGNFDTNRDGQLNGGELNGLTAWTDSNEDGIAQIPELSSLSMA 394 R L+ A+ LT QL D N+D L+ EL GL AWTD NEDGIAQ EL+SL A Sbjct: 303 RKLHFLDGADKPLTEAQLAALDKNKDAHLDSDELAGLHAWTDLNEDGIAQAGELTSLPSA 362 Query: 395 MMRAGLTT-VRALDYGFYTAGNASFRNEAQLQRAPASPFWDREPFLPWAQFSSYDFLRRA 453 M AGL + +R DY Y GNASFR Q+Q A S+ + Sbjct: 363 MTAAGLASGLRVADYQVYLRGNASFRTPEQVQ----------------AMRSAAQASGKK 406 Query: 454 DNTYYINDTQFIQFGPNQVKIN-NSNRDSLIGTDGDDSFNANYYAAYNGIYFNTDLLVKF 512 + ND + F N +IN N D + G DGDD+ Y+A Sbjct: 407 NQGGAGND---VLFATNGEEINGNGGDDVIYGGDGDDTLVGGTYSA-------------- 449 Query: 513 YAGGGNDLMGGSVRNDTLWGGTGDDALWGYEGNDTLYGEEGNDELIGGTGHDLLDGGTGD 572 L G ND L+GG G D+L G GND L G G+D + GG G D+ + Sbjct: 450 -------LARGETDNDVLYGGAGKDSLSGGVGNDLLDGGTGDDRMYGGAGDDIYVVDSAG 502 Query: 573 DMLF--AEAGNDTLIG------GEGNDELQAGDG----------NDALYGGAGHDKLFGQ 614 D +F A+AG DT++ GE ++L+ +G ++ L G + + L G Sbjct: 503 DGVFENADAGRDTVLAGMSTTLGENVEDLRLLEGGSYNGTGNFLDNRLTGNSQDNILDGL 562 Query: 615 AGDDTLYGGDGND 627 AG DT+ GG GND Sbjct: 563 AGADTMMGGQGND 575 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 100/201 (49%), Gaps = 20/201 (9%) Query: 527 NDTLWGGTGDDALWGYEGNDTLYGEEGNDELIGGTGHDLLDGGTGDDMLFAEAGNDTLIG 586 ND L+ G++ + G G+D +YG +G+D L+GGT L G T +D+L+ AG D+L G Sbjct: 413 NDVLFATNGEE-INGNGGDDVIYGGDGDDTLVGGTYSALARGETDNDVLYGGAGKDSLSG 471 Query: 587 GEGNDELQAGDGNDALYGGAGHD-KLFGQAGDDTLYGGDG--NDVLVGFTPSNDSKQTLA 643 G GND L G G+D +YGGAG D + AGD D + VL G + TL Sbjct: 472 GVGNDLLDGGTGDDRMYGGAGDDIYVVDSAGDGVFENADAGRDTVLAGMS------TTLG 525 Query: 644 SGESDNDTLRGGRGNDSLYGGLGN---DTLDGGDDNDLIFGEAGNDTLFGSAGEDELDGG 700 D L GG Y G GN + L G ++++ G AG DT+ G G D Sbjct: 526 ENVEDLRLLEGGS-----YNGTGNFLDNRLTGNSQDNILDGLAGADTMMGGQGNDRYFVD 580 Query: 701 AGNDSV--DGGAGIDKIFGGV 719 D V + G GID ++ V Sbjct: 581 NVGDQVIEEAGEGIDTVYSTV 601 Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 116/257 (45%), Gaps = 45/257 (17%) Query: 622 GGDGNDVLVGFTPSNDSKQTLASGESDNDTLRGGRGNDSLYGGLGNDTLDGGDDNDLIFG 681 GG GNDVL ++ + + G G+D +YGG G+DTL GG + L G Sbjct: 409 GGAGNDVLFA---------------TNGEEINGNGGDDVIYGGDGDDTLVGGTYSALARG 453 Query: 682 EAGNDTLFGSAGEDELDGGAGNDSVDGGAGIDKIFGGVGNDTLWGGSGNDILVGFTPSND 741 E ND L+G AG+D L GG GND +DGG G D+++GG G+D S D + F ++ Sbjct: 454 ETDNDVLYGGAGKDSLSGGVGNDLLDGGTGDDRMYGGAGDDIYVVDSAGDGV--FENADA 511 Query: 742 SKQSLSAGETDDDTMYGGTGDDFMV---------GGFGNDQMWGGIGNDEAQGGVGDDQL 792 + ++ AG + T G +D + G F ++++ G ++ G G D + Sbjct: 512 GRDTVLAGMS---TTLGENVEDLRLLEGGSYNGTGNFLDNRLTGNSQDNILDGLAGADTM 568 Query: 793 YGEEGNDRLF-----------GGAGNDVIYGGTGDDIIVGGAASNEAALAAGVSDSNFLY 841 G +GNDR F G G D +Y + +G N + A +Y Sbjct: 569 MGGQGNDRYFVDNVGDQVIEEAGEGIDTVYSTVS--MTLGANVENLTLMDARTPVHGEIY 626 Query: 842 GGAGNDIIIGGIGNDYI 858 G D +I G Y+ Sbjct: 627 ---GQDALIYGTPKSYL 640 >gi|300312186|ref|YP_003776278.1| calcium binding secreted hemolysin protein [Herbaspirillum seropedicae SmR1] Length = 1080 Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust. Identities = 300/569 (52%), Positives = 382/569 (67%), Gaps = 30/569 (5%) Query: 803 GGAGNDVIYGGTGDDIIVGGAASNEAALAAGVSDSNFLYGGAGNDIIIGGIGNDYIDGGA 862 G AG+D + G TG+D L+GG G D + G GND +DGG Sbjct: 539 GTAGDDQLLGSTGED---------------------SLHGGDGKDWLFGFDGNDVLDGGL 577 Query: 863 GADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTVVASANTMLAANVDELRLMEGGSFNGT 922 GAD + GG GDD YIVNS +D ++E G+DTV+AS +T+LAANV++LRL+EGG+ NG Sbjct: 578 GADTLYGGDGDDTYIVNSSDDRVVETINGGHDTVIASCSTILAANVEDLRLVEGGNLNGA 637 Query: 923 GNSGANKLIGNSQANILDGVTGADIMIGGQGNDIYYVDDLDDRVIELAGEGNDTVLSSIS 982 GN+ N ++GN Q NILDG GAD MIGG GND Y+VDD D+V E A EG DTV S IS Sbjct: 638 GNTLDNLIVGNGQDNILDGGVGADTMIGGLGNDSYFVDDAGDQVTEAADEGVDTVYSRIS 697 Query: 983 HTLGAQIENLGLLDFSKPEKGIADGVDILVYGYPKANELDYMQGNAVRDYAGTCALTSIA 1042 L A +ENL LLD P +G +G L+YG PKA +LDY QGN V Y GTC TS+ Sbjct: 698 MRLAANVENLTLLDGGTPLRGTVEGKAALIYGAPKAYDLDYQQGNGVTGYDGTCGETSVV 757 Query: 1043 NLAIQANQNLSEAQVVQRAIDNQWCVTDSTVSDYERGGSNYLGQRALLDSYGIRNGLIQG 1102 N+ A+Q +SE +VVQRAID +WC+TD+ S +GGS+ L Q+ LL+SYG+R Sbjct: 758 NVLRMADQWVSEKEVVQRAIDKKWCITDAP-SASAKGGSSALDQKRLLESYGLRAEYTLK 816 Query: 1103 YNEQGIANLIKGGRGVIIAVNAGKLWGESAYLDGGGVN---HVVTVTGVACDAATGAING 1159 Y++ +A L+K GRGV+++V++ +LW G G+N HVVTVTGVA A G + G Sbjct: 817 YDQDKLAALVKEGRGVMVSVDSRRLWS-----GGKGLNFTDHVVTVTGVAYAAEKGELIG 871 Query: 1160 FYIADSGRGLVSDMTRYLSLADFRRNANVANAYSIYTIDPIKLRNENIDGTGNELANIIT 1219 FYIADSGRGL D TRY+S + R A+V A +YT+DPIKLR +N++ TGNEL N + Sbjct: 872 FYIADSGRGLAEDATRYVSADELRAMADVRGASMVYTLDPIKLRQQNLEATGNELDNHLV 931 Query: 1220 GNRGDNILTGGRGNDTIIGQAGNDTYRFSRGDGIDTIIDSDATQGNIDVLELSGIHQQNL 1279 GNRGDN++TG +GNDT++GQAGNDTY F +GDG D + D DAT GNID ++ S Q NL Sbjct: 932 GNRGDNLITGAKGNDTLVGQAGNDTYVFGKGDGRDLVADHDATAGNIDTIKFSDARQTNL 991 Query: 1280 WFRHVGDDLQINVMGTADQIVVKGWYGSGADESTGRIERIKTADGLNLHDTDVEQFVQAM 1339 WFR VG DLQI+V+GT DQ+ VK WY G + RIERIKTADG L+D+DV++ VQAM Sbjct: 992 WFRQVGQDLQIDVLGTTDQVTVKDWYVGGDSGTDNRIERIKTADGKTLYDSDVDRLVQAM 1051 Query: 1340 AGFAAPSAAQTSWTNGQTSNGRILMTVTH 1368 A FA P A QTSW +GQ G +L+TV H Sbjct: 1052 ASFAPPPATQTSWRDGQQEKGAVLLTVNH 1080 Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 143/333 (42%), Gaps = 67/333 (20%) Query: 310 PD-LFPIGAFYESKSTVT-DRADSIAQRTFRILNNANLALTATQLGNFDTNRDGQLNGGE 367 PD L PI A E S + S A R IL++ A++A Q+ D N +G+L GE Sbjct: 399 PDSLLPISAINERPSKPELESTSSAAARRLHILDHNGKAMSAAQVAALDLNHNGKLEAGE 458 Query: 368 LNGLTAWTDSNEDGIAQIPELSSLSMAMMRAGLT-TVRALDYGFYTAGNASFRNEAQLQR 426 L L AWTDSNED +AQ EL+SLS A+ AGL T+RA DY YT G R E Sbjct: 459 LADLKAWTDSNEDDLAQASELTSLSDALKAAGLPNTLRATDYSIYTVGKGP-RQE----- 512 Query: 427 APASPFWDREPFLPWAQFSSYDFLRRADNTYYINDTQFIQFGPNQVKINNSNRDSLIGTD 486 W+ + L A S F P + + D L+G+ Sbjct: 513 ------WNFKSLL--ATLS--------------GQGAFFFVLPATPQAGTAGDDQLLGST 550 Query: 487 GDDSFNANYYAAYNGIYFNTDLLVKFYAGGGNDLMGGSVRNDTLWGGTGDDALWGYEGND 546 G+DS + G G D + G ND L GG G D L+G +G+D Sbjct: 551 GEDS---------------------LHGGDGKDWLFGFDGNDVLDGGLGADTLYGGDGDD 589 Query: 547 TLYGEEGNDELIGGT--GHDLLDGGTG-------DDMLFAEAGNDTLIGGEGN--DELQA 595 T +D ++ GHD + +D+ E GN + G GN D L Sbjct: 590 TYIVNSSDDRVVETINGGHDTVIASCSTILAANVEDLRLVEGGN---LNGAGNTLDNLIV 646 Query: 596 GDGND-ALYGGAGHDKLFGQAGDDTLYGGDGND 627 G+G D L GG G D + G G+D+ + D D Sbjct: 647 GNGQDNILDGGVGADTMIGGLGNDSYFVDDAGD 679 Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 115/214 (53%), Gaps = 18/214 (8%) Query: 748 AGETDDDTMYGGTGDDFMVGGFGNDQMWGGIGNDEAQGGVGDDQLYGEEGNDRLFGGAGN 807 AG DD + G TG+D + GG G D ++G GND GG+G D LYG +G+D + + Sbjct: 538 AGTAGDDQLLGSTGEDSLHGGDGKDWLFGFDGNDVLDGGLGADTLYGGDGDDTYIVNSSD 597 Query: 808 DVIYGGT--GDDIIVGGAASNEAALAAGVSDSNFLYG----GAGN---DIIIGGIGNDYI 858 D + G D ++ AS LAA V D + G GAGN ++I+G ++ + Sbjct: 598 DRVVETINGGHDTVI---ASCSTILAANVEDLRLVEGGNLNGAGNTLDNLIVGNGQDNIL 654 Query: 859 DGGAGADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTVVASANTMLAANVDELRLMEGGS 918 DGG GAD M GG G+D Y V+ D + E A EG DTV + + LAANV+ L L++GG+ Sbjct: 655 DGGVGADTMIGGLGNDSYFVDDAGDQVTEAADEGVDTVYSRISMRLAANVENLTLLDGGT 714 Query: 919 -FNGTGNSGANKLIGNSQANILD-----GVTGAD 946 GT A + G +A LD GVTG D Sbjct: 715 PLRGTVEGKAALIYGAPKAYDLDYQQGNGVTGYD 748 Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 14/147 (9%) Query: 579 AGNDTLIGGEGNDELQAGDGNDALYGGAGHDKLFGQAGDDTLYGGDGNDVLVGFTPSNDS 638 AG+D L+G G D L GDG D L+G G+D L G G DTLYGGDG+D + S+D Sbjct: 541 AGDDQLLGSTGEDSLHGGDGKDWLFGFDGNDVLDGGLGADTLYGGDGDDTYI--VNSSDD 598 Query: 639 KQTLASGESDNDTLRGGRGNDSLYGGLGNDTLDGGDDNDLIFGEAGNDTLFGSAGEDELD 698 + +T+ G G+D++ T+ + DL E GN G+ ++ + Sbjct: 599 RVV--------ETING--GHDTVIASCS--TILAANVEDLRLVEGGNLNGAGNTLDNLIV 646 Query: 699 GGAGNDSVDGGAGIDKIFGGVGNDTLW 725 G ++ +DGG G D + GG+GND+ + Sbjct: 647 GNGQDNILDGGVGADTMIGGLGNDSYF 673 Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 76/156 (48%), Gaps = 23/156 (14%) Query: 550 GEEGNDELIGGTGHDLLDGGTGDDMLFAEAGNDTLIGGEGNDELQAGDGNDALYGGAGHD 609 G G+D+L+G TG D L GG G D LF GND L GG G D L GDG+D + D Sbjct: 539 GTAGDDQLLGSTGEDSLHGGDGKDWLFGFDGNDVLDGGLGADTLYGGDGDDTYIVNSSDD 598 Query: 610 KLFGQAGDDTLYGGDGNDVLVGFTPSNDSKQTLASGESDNDTLRGGRGNDSLYGGLGNDT 669 ++ +T+ G G+D ++ LA+ D + GG N G GN T Sbjct: 599 RVV-----ETING--GHDTVIA-----SCSTILAANVEDLRLVEGGNLN-----GAGN-T 640 Query: 670 LDGGDDNDLIFGEAGNDTLFGSAGEDELDGGAGNDS 705 LD +LI G ++ L G G D + GG GNDS Sbjct: 641 LD-----NLIVGNGQDNILDGGVGADTMIGGLGNDS 671 Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 14/137 (10%) Query: 654 GGRGNDSLYGGLGNDTLDGGDDNDLIFGEAGNDTLFGSAGEDELDGGAGNDSVDGGAGID 713 G G+D L G G D+L GGD D +FG GND L G G D L GG G+D+ + D Sbjct: 539 GTAGDDQLLGSTGEDSLHGGDGKDWLFGFDGNDVLDGGLGADTLYGGDGDDTYIVNSSDD 598 Query: 714 KIFGGV--GNDTLWGGSGNDILVGFTPSNDSKQSLS-------AGETDDDTMYGGTGDDF 764 ++ + G+DT+ S + IL +N L AG T D+ + G D+ Sbjct: 599 RVVETINGGHDTVI-ASCSTILA----ANVEDLRLVEGGNLNGAGNTLDNLIVGNGQDNI 653 Query: 765 MVGGFGNDQMWGGIGND 781 + GG G D M GG+GND Sbjct: 654 LDGGVGADTMIGGLGND 670 >gi|300311899|ref|YP_003775991.1| hemolysin-type calcium binding protein [Herbaspirillum seropedicae SmR1] Length = 1974 Score = 483 bits (1242), Expect = e-137, Method: Compositional matrix adjust. Identities = 240/450 (53%), Positives = 321/450 (71%), Gaps = 2/450 (0%) Query: 919 FNGTGNSGANKLIGNSQANILDGVTGADIMIGGQGNDIYYVDDLDDRVIELAGEGNDTVL 978 NG GN+ AN++ GN + NILDG+ GAD + GG+GND YYVDD D+VIE AGEG DTV Sbjct: 694 LNGIGNALANRITGNDRDNILDGMAGADTLTGGKGNDSYYVDDAGDKVIEKAGEGLDTVY 753 Query: 979 SSISHTLGAQIENLGLLDFSKPEKGIADGVDILVYGYPKANELDYMQGNAVRDYAGTCAL 1038 +++S TL A +ENL LLD SKP+ + +G+ +LVYG PK+ +LDY QG+AV+ Y GTC Sbjct: 754 ATVSTTLAANVENLVLLDASKPQTAVVNGIHVLVYGRPKSYQLDYKQGDAVKGYRGTCGE 813 Query: 1039 TSIANLAIQANQNLSEAQVVQRAIDNQWCVTDSTVSDYERGGSNYLGQRALLDSYGIRNG 1098 T++AN+ + ++ SE +VV+RAI + C T T D RGGS+ Q+ALL +G+R+ Sbjct: 814 TAVANITMLGDRPASEKEVVERAIKEKLCDT-LTPYDQFRGGSDEKQQQALLKDFGLRSS 872 Query: 1099 LIQGYNEQGIANLIKGGRGVIIAVNAGKLWGESAYLDGGGVNHVVTVTGVACDAATGAIN 1158 + +G++E+ +A IK G+GV + V+AG LWG S D +HV+TVTGVAC A TG I Sbjct: 873 VTEGFDEKSVAQSIKEGKGVAVGVSAGNLWGMS-LRDQDQSDHVITVTGVACSAMTGDIV 931 Query: 1159 GFYIADSGRGLVSDMTRYLSLADFRRNANVANAYSIYTIDPIKLRNENIDGTGNELANII 1218 GFYIADSG G SD R++S R A V +Y++ T DPIKLRN+N+D TGNEL N++ Sbjct: 932 GFYIADSGLGRESDRCRFVSSEQLRYAAKVNGSYTLTTDDPIKLRNQNLDATGNELDNVL 991 Query: 1219 TGNRGDNILTGGRGNDTIIGQAGNDTYRFSRGDGIDTIIDSDATQGNIDVLELSGIHQQN 1278 GNRG+N+L+GG+GND +IG GNDTY F++GDG D + D DAT+ N+D L + Q N Sbjct: 992 VGNRGNNVLSGGKGNDLLIGGPGNDTYSFAKGDGQDELYDHDATKDNLDTLTFADAKQTN 1051 Query: 1279 LWFRHVGDDLQINVMGTADQIVVKGWYGSGADESTGRIERIKTADGLNLHDTDVEQFVQA 1338 LWF G+DL+I+V+G+ DQ+ VK WY G + IERIKTADG L+DTDVEQ VQA Sbjct: 1052 LWFSKAGNDLKISVLGSKDQVTVKDWYVGGDSGTDNHIERIKTADGKTLYDTDVEQLVQA 1111 Query: 1339 MAGFAAPSAAQTSWTNGQTSNGRILMTVTH 1368 MA FA P+A Q+SW +GQ+SNG++L+TVTH Sbjct: 1112 MASFAPPTATQSSWKDGQSSNGKVLLTVTH 1141 Score = 462 bits (1190), Expect = e-131, Method: Compositional matrix adjust. Identities = 240/473 (50%), Positives = 320/473 (67%), Gaps = 4/473 (0%) Query: 896 VVASANTMLAANVDELRLMEGGSFNGTGNSGANKLIGNSQANILDGVTGADIMIGGQGND 955 V A N L + D+L L G S NG GN+ N+L GN Q NILDG+ G D MIGG+G+D Sbjct: 1506 VAAPKNLSLDEDTDDLSL--GSSLNGIGNALDNRLTGNDQNNILDGMGGTDTMIGGKGDD 1563 Query: 956 IYYVDDLDDRVIELAGEGNDTVLSSISHTLGAQIENLGLLDFSKPEKGIADGVDILVYGY 1015 YY+D+ D+++E AGEG DTV ++ S TL A +ENL LLD SKP+ + +GV++LVYG Sbjct: 1564 SYYLDNAGDKIVEQAGEGVDTVYATASTTLAANVENLVLLDASKPQSAVVNGVNVLVYGM 1623 Query: 1016 PKANELDYMQGNAVRDYAGTCALTSIANLAIQANQNLSEAQVVQRAIDNQWCVTDSTVSD 1075 P++ +LDY QG V Y GTC TS+AN+ + +SE +VVQRAI C T + +D Sbjct: 1624 PRSYQLDYDQGGEVEGYWGTCGETSVANVTLMGGHAVSEKEVVQRAIKENLCDTAAESAD 1683 Query: 1076 YERGGSNYLGQRALLDSYGIRNGLIQGYNEQGIANLIKGGRGVIIAVNAGKLWGESAYLD 1135 RG ++ ++ALL +G + + + + +A IK G+GVII+V+A KLW + Sbjct: 1684 -TRGATSEDDRQALLQDFGFAASVEEELDLKAVAQSIKDGKGVIISVSASKLWDLHEENE 1742 Query: 1136 GGGVNHVVTVTGVACDAATGAINGFYIADSGRGLVSDMTRYLSLADFRRNANVANAYSIY 1195 +H +TVTGVAC AA+G I GFYIADSGRGL SDM R++SL R NV A ++ Sbjct: 1743 DAS-DHAITVTGVACSAASGKIVGFYIADSGRGLASDMCRFVSLQRLRAATNVYGADTVT 1801 Query: 1196 TIDPIKLRNENIDGTGNELANIITGNRGDNILTGGRGNDTIIGQAGNDTYRFSRGDGIDT 1255 T DPIKLRN+N+D TGNEL NI+ GNRG+N LTGG+GND +IG AGNDTY F++GDG D Sbjct: 1802 TDDPIKLRNQNLDATGNELDNILVGNRGNNALTGGKGNDLLIGGAGNDTYAFAKGDGQDV 1861 Query: 1256 IIDSDATQGNIDVLELSGIHQQNLWFRHVGDDLQINVMGTADQIVVKGWYGSGADESTGR 1315 + D DAT+GN+D L S + Q NLW G+DL+I+V+GT DQ++VK WY G S Sbjct: 1862 LYDHDATKGNLDTLSFSDVKQTNLWLSKAGNDLRIDVLGTTDQVLVKDWYVGGDSGSDNH 1921 Query: 1316 IERIKTADGLNLHDTDVEQFVQAMAGFAAPSAAQTSWTNGQTSNGRILMTVTH 1368 +ERIKTADG L+D+DV++ VQAMA FA P+A QTSW NG++L+T++H Sbjct: 1922 VERIKTADGKTLYDSDVDKLVQAMASFAPPAATQTSWPETAGGNGKVLLTISH 1974 Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 129/203 (63%), Gaps = 10/203 (4%) Query: 1006 DGVDILVYGYPKA-NELDYMQGNAVRDYAGTCALTSIANLAIQANQNLSEAQVVQRAIDN 1064 DG D+LVYGYPK+ + L+Y QG AV Y GTC SIANL A Q++SEA V++RAI N Sbjct: 192 DGKDVLVYGYPKSYDMLNYSQGFAVSGYYGTCTEASIANLLSIAGQDVSEADVIKRAIVN 251 Query: 1065 QWCVTDSTVSDYERGGSNYLGQRALLDSYGIRNGLIQGYNEQGIANLIKGGRGVIIAVNA 1124 WC T S + RGG+ QR LL SYG+ G++ ++ + +A L+K GRGVI+ V + Sbjct: 252 GWCDTTSD-NPCLRGGAMTGQQRDLLKSYGVETGVLNDFDPEKLAMLVKQGRGVILGVES 310 Query: 1125 GKLWGESAYLDGGGV---NHVVTVTGVACDAATGAINGFYIADSGRGLVSDMTRYLSLAD 1181 +LWG + NHV+ +TGVA A TGA+ GFYI+D+GRG D R++++++ Sbjct: 311 KELWGAELPPILHTLLNDNHVINLTGVAYAADTGALLGFYISDTGRGRPEDKARFMTVSE 370 Query: 1182 FRRNANV---ANAYSIYTIDPIK 1201 + A+ NA IYT+DPIK Sbjct: 371 LYKVAHFDYGCNA--IYTLDPIK 391 Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 4/217 (1%) Query: 987 AQIENLGLLDFSKPEKGIADGVDILVYGYPKA-NELDYMQGNAVRDYAGTCALTSIANLA 1045 A++ + G D SKP+ G GV +++YG PKA + L+Y Q + Y T ++AN+A Sbjct: 393 AKVPDTGPADPSKPQMGKEYGVKLIIYGDPKAYHNLNYDQPVVMAMYTETSGEIAVANIA 452 Query: 1046 IQANQNLSEAQVVQRAIDNQWCVTDSTVSDYERGG-SNYLGQRALLDSYGIRNGLIQGYN 1104 A Q+LS V+Q AID + C D+T D + GG + Q ALL +GI L QG++ Sbjct: 453 ALAGQSLSPKTVLQTAIDEKLC--DTTKKDRDLGGGTTSENQVALLKKFGIAATLEQGFD 510 Query: 1105 EQGIANLIKGGRGVIIAVNAGKLWGESAYLDGGGVNHVVTVTGVACDAATGAINGFYIAD 1164 +A I G+GVI+ VN G LW ++ G ++ VTVTGVA A TG + GFY+AD Sbjct: 511 ANAVAQHIIEGKGVILRVNGGVLWCKTEPDHPGRSDYSVTVTGVAFSADTGEVAGFYLAD 570 Query: 1165 SGRGLVSDMTRYLSLADFRRNANVANAYSIYTIDPIK 1201 G L RY+ + R+ +V +I T D IK Sbjct: 571 PGFELSGARPRYIEINHLRQATSVTGVTTITTNDAIK 607 Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 55/90 (61%) Query: 842 GGAGNDIIIGGIGNDYIDGGAGADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTVVASAN 901 G A ++ + G N+ +DG G D M GGKGDD Y +++ D I+E AGEG DTV A+A+ Sbjct: 1531 GNALDNRLTGNDQNNILDGMGGTDTMIGGKGDDSYYLDNAGDKIVEQAGEGVDTVYATAS 1590 Query: 902 TMLAANVDELRLMEGGSFNGTGNSGANKLI 931 T LAANV+ L L++ +G N L+ Sbjct: 1591 TTLAANVENLVLLDASKPQSAVVNGVNVLV 1620 Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 843 GAGNDIIIGGIGND---YIDGGAGADKMEGGKGDDIYIVNSVNDVILEHAGEGYDTVVAS 899 G GN + GND +DG AGAD + GGKG+D Y V+ D ++E AGEG DTV A+ Sbjct: 696 GIGNALANRITGNDRDNILDGMAGADTLTGGKGNDSYYVDDAGDKVIEKAGEGLDTVYAT 755 Query: 900 ANTMLAANVDELRLMEGGSFNGTGNSGANKLI-GNSQANILD 940 +T LAANV+ L L++ +G + L+ G ++ LD Sbjct: 756 VSTTLAANVENLVLLDASKPQTAVVNGIHVLVYGRPKSYQLD 797 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,353,290 Number of extensions: 198431 Number of successful extensions: 1228 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 614 Number of HSP's successfully gapped: 36 Length of query: 1368 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1271 Effective length of database: 1,160,575 Effective search space: 1475090825 Effective search space used: 1475090825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 137 (57.4 bits)