BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3409.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...   359   e-101
gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...    60   9e-11

>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  359 bits (922), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/209 (89%), Positives = 196/209 (93%)

Query: 1   MMSTPDLLAPERPIPTTREIFLGFLGLGMTAFGGALPLAQRMIVERRRWLTDAEFVELLG 60
           MMSTPDLLAPERP+PTTRE+FLGFLGLGMTAFGGALPLA RMIVERR+WLTD EFVELLG
Sbjct: 13  MMSTPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAHRMIVERRKWLTDPEFVELLG 72

Query: 61  LCQFLPGGNIINLSVALGMKFRGWKGALAGITGLIAVPSMVVILLGMIYQHFQHDPNVKH 120
           LCQFLPGGNIINLSVALGMKFRGWKGALAG+TGLIAVPSMVVILLGMIYQHFQHDPNVKH
Sbjct: 73  LCQFLPGGNIINLSVALGMKFRGWKGALAGVTGLIAVPSMVVILLGMIYQHFQHDPNVKH 132

Query: 121 LFAGLAAAAAGLLIQMAVKITLPLRKNMVLAAVAVACFIAIALLRIPLLWVMLVMTPISI 180
           LFAGLAAAAAGLLIQMAVKI LPLRKN+VLA VAV CF+AIALLRIPLLWVMLVMTPIS+
Sbjct: 133 LFAGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPLLWVMLVMTPISV 192

Query: 181 FLTARYGERFAAKPQVAAKPDAVKQEGAQ 209
            LTARYGERFAAKPQ     D  K+EGAQ
Sbjct: 193 VLTARYGERFAAKPQSVPVQDEGKKEGAQ 221


>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 60.5 bits (145), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 4/89 (4%)

Query: 19  EIFLGFLGLGMTAFGGA---LPLAQRMIVERRRWLTDAEFVELLGLCQFLPGGNIINLSV 75
           E+FL FL LG+T+FGG    L   +   V RR WL++A + +L+ +CQFLPG +   + +
Sbjct: 94  EVFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGM 153

Query: 76  ALGMKFRGWKGALAGITGLIAVPSMVVIL 104
           A+G+   G+ GALA   G   +PS ++++
Sbjct: 154 AIGVLRAGYGGALAAWLGFT-LPSALLLM 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 598,467
Number of extensions: 22420
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)