BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3406.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312746|ref|YP_003776838.1| dihydrofolate reductase oxidore...   282   8e-78

>gi|300312746|ref|YP_003776838.1| dihydrofolate reductase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  282 bits (722), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 139/164 (84%), Positives = 152/164 (92%)

Query: 1   MSTSSGQLTIIVATDLNNGIGIRNTLPWHLPEDLAHFKRTTSGHTILMGRKTFESIGRPL 60
           M+TSSGQLT+IVATDLNNGIGI NTLPW LPEDLAHFKRTTSGH ILMGRKTF+SIGRPL
Sbjct: 1   MTTSSGQLTLIVATDLNNGIGINNTLPWRLPEDLAHFKRTTSGHAILMGRKTFDSIGRPL 60

Query: 61  PNRRNIVITRNALWQHSGVETTGSLAQAAALAGAAPAFIIGGAQVYAEALPLVDRLIITR 120
           PNRRNIVITRNA WQH GVET GSL +AAAL   APAFIIGGAQ+YAEALPL DRLIITR
Sbjct: 61  PNRRNIVITRNAGWQHDGVETAGSLQEAAALCAGAPAFIIGGAQIYAEALPLADRLIITR 120

Query: 121 IARAFECDAFFPAIDEELWQETAREQHHAETSGLDYAFVTYERR 164
           IA+ F+CDAFFPA+D+++WQETARE+HH+ETSGLDYAFVTYERR
Sbjct: 121 IAQTFDCDAFFPALDQQVWQETAREEHHSETSGLDYAFVTYERR 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 437,418
Number of extensions: 14767
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)