BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3405.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 1002 0.0 gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 462 e-131 gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 345 4e-96 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/541 (92%), Positives = 519/541 (95%) Query: 1 MSDKTIMLLYTTSGPGQGHRSPPRAARLTWWRRLAAPAALAGLLALALPQAALAFDFNTV 60 MSDKTIMLL+TTSGP A R +WWRRLA PA LAGLLALALPQAALAFDFNTV Sbjct: 1 MSDKTIMLLHTTSGPACAPLCERSALRSSWWRRLAVPATLAGLLALALPQAALAFDFNTV 60 Query: 61 AARAKALAGKSYKKPADDLPKSLKDLSYEQASQLYFRDDKSYWRAQKLPFELSFIHLGGS 120 AARAKALAGKSYKKPAD+LPKSLKDLSYEQASQ+YFRDDKSYWRAQKLPFELSFIHLG S Sbjct: 61 AARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSFIHLGAS 120 Query: 121 YTEPIKINEVVGDAVREIHFSPALFDYSANRSVDPRSLRNIGFAGFRIRFPLNSPKVKDD 180 YTEPIK+NEVVGDAVREIHF+PALFDYSA RSVDPRSLRN+GFAGFR+RFP+NS KVKDD Sbjct: 121 YTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLGFAGFRVRFPVNSAKVKDD 180 Query: 181 VLTFHGASYFRAMGKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSADAKELVIYA 240 VLTFHGASYFRA+GKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSA++KELVIYA Sbjct: 181 VLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSAESKELVIYA 240 Query: 241 LLDSPRATGAYRFVLKPGVDTVMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF 300 LLDSPRATGAYRFVLKPG DTVMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF Sbjct: 241 LLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF 300 Query: 301 RPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSHYEDLDY 360 RPEVHDSDGL+MQSGTGEWLWRPLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSHYEDLDY Sbjct: 301 RPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSHYEDLDY 360 Query: 361 NYQSRPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPFNVEYRLSW 420 NYQ+RPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPFNVEYRLSW Sbjct: 361 NYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPFNVEYRLSW 420 Query: 421 QKDNEKRPPLAYVTQTLFGHGYRPKQESKAEEVQQLSIDFDGANLKKLPANARVEGVVEA 480 QKDNEKRPPLAYVTQTLFGHGYRPKQE K ++VQQLSIDFDG NLKKLPANARVEGVVEA Sbjct: 421 QKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSIDFDGGNLKKLPANARVEGVVEA 480 Query: 481 DANGKLASVTTRKNDVTGGWRVEVKLRRLEENKPVELRGFLRNANGGTTLSETWSYILPP 540 DANGKLASVTTRKN+ TGGWRVEVKLRR EENKPVELRGFLRNANGGTTLSETWSYILPP Sbjct: 481 DANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLRNANGGTTLSETWSYILPP 540 Query: 541 N 541 N Sbjct: 541 N 541 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 462 bits (1189), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/511 (46%), Positives = 323/511 (63%), Gaps = 7/511 (1%) Query: 34 LAAPAALAGLLALALPQAALAFDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQ 93 ++A + L A A Q + FD N ARAK LA K Y+KP +L + + + + Sbjct: 2 VSATLSACLLAASAQAQTSQGFDLNQAVARAKDLAAKPYQKPVSNLSPTFAAMQFADYMK 61 Query: 94 LYFRDDKSYWRAQKLPFELSFIHLGGSYTEPIKINEVVGDAVREIHFSPALFDYSANRSV 153 + + +K WR QK PF+L+F H G + P+ I+E++ V+++ +S F++ + ++ Sbjct: 62 IQPKSEKFEWRDQKTPFKLAFYHQGMQFNAPVAIHEIIDGRVQDVGYSTDRFNF-GDLNL 120 Query: 154 DPRSLRNIGFAGFRIRFPLNSPKVKDDVLTFHGASYFRAMGKGQSYGLSARGLAIDTALY 213 S ++G+AGFR+ +P+N +D+V++ GASYFR +GKGQ YGLSARGLAIDTA+ Sbjct: 121 AKDSTAHLGYAGFRVVYPINRDDKEDEVMSVLGASYFRVIGKGQVYGLSARGLAIDTAMM 180 Query: 214 SGEEFPRFTEFWLERPSADAKELVIYALLDSPRATGAYRFVLKPGVDTVMDVKAQLYLRS 273 SGEEFP FTEFW++RP+ K+L YALLDSPRATGAY+F L PG D ++DV+A+++LR Sbjct: 181 SGEEFPHFTEFWIQRPAPGEKQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRG 240 Query: 274 NVTKLGIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVT 333 V +LGIAPLTSMFLFG NQ +FRP +HDS+GL++ +G GEWLWRPL +P+ + V+ Sbjct: 241 EVGRLGIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWRPLNDPQNVEVS 300 Query: 334 SFSFDNPLGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETN 393 SF NP GFGL+QR R FS YEDL Y RPSAW+EPKG WG G V+LV+IPT DETN Sbjct: 301 SFEVSNPRGFGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQLVEIPTADETN 360 Query: 394 DNIVAYWIPNTLPKPGQPFNVEYRLSWQKDNEK--RPPLAYVTQTLFGHGYRPKQE--SK 449 DNIVAYW+P LP G P +YR+ W D + +V QT G + Sbjct: 361 DNIVAYWLPAQLPARGTPLAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRA 420 Query: 450 AEEVQQLSIDFDGANLKKLPANARVEGVVEADANGKLASVTTRKNDVTGGWRVEVKLRRL 509 + L +DF G L LPA V+ V NG+L V + N GWR+ ++++ Sbjct: 421 FDGTTALLVDFTGGPLGALPAGTPVQPQVSVSNNGELIDVQLQPNPAINGWRLTLRVKIR 480 Query: 510 EENKPVELRGFLRNANGGTTLSETWSYILPP 540 + VELR L +AN G L+ETWSY LPP Sbjct: 481 NVAQAVELRAAL-SAN-GKPLTETWSYQLPP 509 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 345 bits (886), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 207/504 (41%), Positives = 288/504 (57%), Gaps = 28/504 (5%) Query: 55 FDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQLYFRDDKSYWRAQKLPFELSF 114 F F + RA+ +A Y+ A L + Y+ ++ F+ D++ + PF L+F Sbjct: 44 FSFAQLIERARQMASTPYQPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTF 103 Query: 115 IHLGGSYTEPIKIN--EVVGDAV-----REIHFSPALFDYSAN---RSVDPRSLRNIGFA 164 HLG + P+++ E GDA RE+ + FD A+ ++ P S GFA Sbjct: 104 FHLGKFFRVPVRMFLLEGAGDATAPTQARELRYRDDYFDMPADSPAHALPPGS----GFA 159 Query: 165 GFRIRFP-LNSPKVKD----DVLTFHGASYFRAMGKGQSYGLSARGLAIDTALYS-GEEF 218 GFR + L +VKD D + F GASYFRA+G YGLSARG+AID A+ EEF Sbjct: 160 GFRFQESRLGDQQVKDWRKNDWVAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEF 219 Query: 219 PRFTEFWLERPSADAKELVIYALLDSPRATGAYRFVLKPGVDTVMDVKAQLYLRSNVTKL 278 P FT+F+ E + + +V+YALLD P TGAYRF ++ G M++ QL+LR +V +L Sbjct: 220 PDFTQFFFEPGAPGSDTVVVYALLDGPSITGAYRFAMQRGQGVTMEIDKQLFLRRDVERL 279 Query: 279 GIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTSFSFD 338 G+AP TSM+ + E G D+RPEVHDSDGL++ +G GE LWRPL NP R + +SF+ Sbjct: 280 GLAPATSMYWYSETVKGTGVDWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADR 339 Query: 339 NPLGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVA 398 P GFGLMQRDR F HY D +Y+ RPS WVEP G WG G+V+L+++ T DE +DNIVA Sbjct: 340 QPRGFGLMQRDRDFDHYLD-GVHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVA 398 Query: 399 YWIPNTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQTLFGHGYRPKQESKAEEVQQLSI 458 W+P + G + + YRL WQ + LA T G G +P Q + +V++ + Sbjct: 399 MWVPKAAARAGDRYQLRYRLHWQSETPFPSALARCVATRLGRGGQPGQ-PRPPQVRKFMV 457 Query: 459 DFDGANLKKLPANARVEGVVEADANGKLASVTTRK--NDVTGGWRVEVKLRRLEENKPVE 516 +F G L+ LP + E V+ A + G ++ V T N V G WR + L E +PVE Sbjct: 458 EFKGPPLQALPFGVKPEAVISA-SRGSISYVYTEALPNGVPGHWRAQFDL-TAEGEEPVE 515 Query: 517 LRGFLRNANGGTTLSETWSYILPP 540 LR FLR+ G LSETW + P Sbjct: 516 LRLFLRHQ--GQALSETWLFQYHP 537 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,729,590 Number of extensions: 73176 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 3 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)