BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3390.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 628 0.0 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 276 2e-75 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 135 4e-33 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 628 bits (1619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/371 (84%), Positives = 336/371 (90%) Query: 1 MSSQLFSPLTLRGLTLPNRIAVSPMCQYSATDGLANDWHLVHLGSRAVGGAGLVLAEATA 60 MSS LFSPL LRG+TLPNRIAVSPMCQYSA DG NDWHLVHLGSRAVGGAGLVL EATA Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 61 VLPEGRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGVQLAHAGRKASVLRPWVGPAAS 120 V+ EGRISSADLG+WKDEHIAPLRRITRFIEQQGAVPG+QLAHAGRK+S+LRPW GPA S Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 Query: 121 VPPADGGWVPQAPSALAFDTTYTQPTALTVQDIAGLVQAFAKAAQRALAAGFKVIELHGA 180 VPP+ GGW PQAPSAL FD Y+ P A++V+ I LVQAFA AAQRALAAGFKVIELHGA Sbjct: 121 VPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGA 180 Query: 181 HGYLGHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPDELPLLVRLSATDWAEG 240 HGYLGHQFLSPLSN+R D+YGGSFENRIRFLLE RATRAVWP+ELPLLVRLSATDW +G Sbjct: 181 HGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG 240 Query: 241 GWTPEETVALSIRLRELGVDLVDVSTGGNLPAAAIPVGPGYQTGFAAQVKAQAGIATGTV 300 GWTPEETV LS RLRELGVDLVDVS+GGN P A IPVGPGYQT FAA+VKA+AGIA+G V Sbjct: 241 GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAV 300 Query: 301 GMITDAIQAEHVLRTGQADLVLLARELLRDPYWPMHAAQQLRHEMAWPPQYVRAASSKTP 360 GMITDAIQAEH+LRTGQADLVLLARELLRDPYWP+HAAQQLR E+AWPPQYVRAASSKTP Sbjct: 301 GMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQLREEVAWPPQYVRAASSKTP 360 Query: 361 LRPEVDYGASQ 371 LRPEV YG + Sbjct: 361 LRPEVQYGLKE 371 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 276 bits (706), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/341 (43%), Positives = 202/341 (59%), Gaps = 2/341 (0%) Query: 3 SQLFSPLTLRGLTLPNRIAVSPMCQYSATDGLANDWHLVHLGSRAVGGAGLVLAEATAVL 62 S LF P L+ ++L NRIAV PMCQY A +G NDWHL H S A GGAGLV+ EATAV Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVS 61 Query: 63 PEGRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGVQLAHAGRKASVLRPWVGPAASVP 122 PEGRI+ G+W D + + I+ GAVPG+Q+ HAGRKAS RPW G Sbjct: 62 PEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAA 121 Query: 123 PADGGWVPQAPSALAFDTTYTQ-PTALTVQDIAGLVQAFAKAAQRALAAGFKVIELHGAH 181 GW +PSA+A+ + P A+++ DIA + Q F AA RA AGF+ +ELH AH Sbjct: 122 DDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAH 181 Query: 182 GYLGHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPDELPLLVRLSATDW-AEG 240 GYLG F S +N+RDD YGGS ENR RFLLET+RA R VWP+ L L VR ++ Sbjct: 182 GYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGRD 241 Query: 241 GWTPEETVALSIRLRELGVDLVDVSTGGNLPAAAIPVGPGYQTGFAAQVKAQAGIATGTV 300 T E++ + + ++ G+D++ V+ G +P IP GP + A +V+ +A + + Sbjct: 242 EETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSSA 301 Query: 301 GMITDAIQAEHVLRTGQADLVLLARELLRDPYWPMHAAQQL 341 AE ++ GQ DLV++ R L +P+W AA++L Sbjct: 302 WGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKEL 342 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 176/344 (51%), Gaps = 35/344 (10%) Query: 2 SSQLFSPLTLRGLTLPNRIAVSPMCQYSATDG-LANDWHLVHLGSRAVGGAGLVLAEATA 60 +S LF P+ L + L NRI ++P+ + A G + +D + RA GAGL++AEAT Sbjct: 7 NSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQ 64 Query: 61 VLPEGRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGVQLAHAGRKASVLRPWVGPAAS 120 + PEG+ + G++ D H+A ++IT + +G +QL H GR + P + P + Sbjct: 65 ISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGR---ISHPDLQPGHA 121 Query: 121 VPPADGGWVP--QAPSALAFDTTYTQPTALTVQDIAGLVQAFAKAAQRALAAGFKVIELH 178 +P A P QA + F + P AL ++ +V+ + KAAQ ++ AGF +E+H Sbjct: 122 LPVAPSAVQPEGQAFTESGF-KPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIH 180 Query: 179 GAHGYLGHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPDELPLLVRLS----A 234 A+GYL QFL +N+R D YGGS ENR R LLE V+A +V P E + +RLS A Sbjct: 181 AANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSER-VGIRLSPISPA 239 Query: 235 TDWAEGGWTPEETVALSI----RLRELGVDLVDVSTGGNLPAAAIPVGPGYQTGFAAQVK 290 D A+ P+ + + R + + + +V+ +TGG PG GF QV Sbjct: 240 NDIADS--DPKALFSYVVEQLNRFKLVYLHVVEGATGGPREV------PG---GFDLQVL 288 Query: 291 AQ--AGIATGTVGMITD-AIQAEHVLRTGQADLVLLARELLRDP 331 G+ G D A+QA + +ADLV R + +P Sbjct: 289 RDLFKGLYIANNGYDLDMALQAR---ASNRADLVAFGRPWIANP 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,215,008 Number of extensions: 51607 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 3 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)