BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3389.p (616 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 1030 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 307 2e-84 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 303 2e-83 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 303 2e-83 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 275 6e-75 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/601 (92%), Positives = 571/601 (95%), Gaps = 2/601 (0%) Query: 16 HAVTDNSPQSSSPTARKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQ 75 H D++ + SPTARKSALAALR LLPFL+PYKKQFLLAGLAL+VAAAATLAVPYAFKQ Sbjct: 16 HPADDHA--ADSPTARKSALAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQ 73 Query: 76 MIDLGFGAAGSKSASHINLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAH 135 MIDLGFGAAGSKSASHINLYFLALFGVAC+LGVATALRFYMVSWLGERVTADLRSAVYAH Sbjct: 74 MIDLGFGAAGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAH 133 Query: 136 VVTQSPEFFETTKTGEVLSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARL 195 VVTQSPEFFETTKTGEVLSRLT DTTLIQTLVGTSISMALRNALLF GGM+MLF TSARL Sbjct: 134 VVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARL 193 Query: 196 TSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEA 255 TSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEA Sbjct: 194 TSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEA 253 Query: 256 HRFAQSVERAFQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQF 315 RFAQSVERAF TAMER+RARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQF Sbjct: 254 RRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQF 313 Query: 316 ILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAAL 375 ILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAA SPVQSVLLPEKLPPRTANGAAL Sbjct: 314 ILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAAL 373 Query: 376 QIDALDFHYPSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIR 435 + +DFHYPSRPG SL+ SL VQPGETVA+VGPSGAGKTTLFQLLLRFYDPQQG I Sbjct: 374 TVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQIL 433 Query: 436 LDGVDIRYLTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEF 495 LDGVDIRYL LQ LR AIGIVPQDTVIFSANAMENIRFGRP+ASDAEVIAAAQMAAAHEF Sbjct: 434 LDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEF 493 Query: 496 IERLPNGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSA 555 IERLP Y CFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQ A Sbjct: 494 IERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGA 553 Query: 556 LEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQFET 615 LEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVE+GTHAELVAR+GLYAGLAALQF+T Sbjct: 554 LEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQFQT 613 Query: 616 Q 616 Q Sbjct: 614 Q 614 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 307 bits (786), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 210/589 (35%), Positives = 327/589 (55%), Gaps = 29/589 (4%) Query: 37 ALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMID---LGFGAAGSKSASHI- 92 AL +L F PYK LL L + + AATL PY ++D + F G+ +H+ Sbjct: 167 ALFRLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPF-QNGAPIDTHLA 225 Query: 93 NLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEV 152 LY L G A + R Y+++ + ER+ ADLR+ Y+H++ S E+F +TG++ Sbjct: 226 TLYLSGLLGAAVLAWGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDL 285 Query: 153 LSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVF 212 ++R+ ++T I + + L FA + M+ +T+A L SI + +LP+ F Sbjct: 286 MARIGSETDRICVFLSLHL-------LDFAIDVLMIIMTAAILISINPWLALVTLLPLPF 338 Query: 213 YGRRVR----KLSRASQ--DRV-ADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERA 265 + +L + DR+ ++ + + + + + V+AF E+ E RF ++ Sbjct: 339 IAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHN 398 Query: 266 FQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGS 325 + SL T L ++ V G V ++ G L F+ Y S Sbjct: 399 LMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTR 458 Query: 326 LGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANG--AALQIDALDFH 383 L ++S ++ TQ+AA +R+ D+L S V PE P A+++ + F Sbjct: 459 LDSMSRIVSVTQKAAAGAKRIFDILDHVSSV-----PEPANPVHLEKVQGAIEVRNIGFR 513 Query: 384 YPSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRY 443 Y +R A + SL++ PGE + +VG SG+GK+T+ L+ RFYD +G IR+DGVDIR Sbjct: 514 YGNR---AVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRS 570 Query: 444 LTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGY 503 L + + R IG+V Q+ +F ENI +G+P+A+ E+IAAA+ A AHEFI RLP GY Sbjct: 571 LPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGY 630 Query: 504 QCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGR 563 +GERG LSGG+RQRI+IARALL +P +L+LDEATS++D +E+ +Q AL+ + GR Sbjct: 631 DSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGR 690 Query: 564 TTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQ 612 TT+ IAHRL+T+++ADR++VL+ G++VE G H EL+AR G Y L Q Sbjct: 691 TTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQ 739 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 216/602 (35%), Positives = 316/602 (52%), Gaps = 34/602 (5%) Query: 25 SSSPTA----RKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMID-L 79 SSSP A ++ +R LLP+L YK + LLA L+ A A + VP K+++D + Sbjct: 8 SSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVLKRLVDAM 67 Query: 80 GFGAAGSKSASHINLYFLALFGVACVLGVA--TALRFYMVSWLGERVTADLRSAVYAHVV 137 ++ + L L +G A L A T LR M + + +R + V+ H+ Sbjct: 68 TITPTHPQALLVLPLGLLVAYG-ALRLATALFTELRELMFARVTQRAVRTIALQVFRHLH 126 Query: 138 TQSPEFFETTKTGEVLSRLTADTTLIQTLVG--------TSISMALRNALLFAGGMTMLF 189 S F +TG + + T + +LV T I +AL A L Sbjct: 127 ALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFS 186 Query: 190 ITSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFT 249 + +A I+ V + R + +L + R D+ +LN TV+ F Sbjct: 187 VITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDS------LLN-YETVKYFG 239 Query: 250 HEEIEAHRFAQSVERAFQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSG 309 +EE EA R+ + ++R + A++ + SLL ++ A+ +LW V++GSM+ Sbjct: 240 NEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTL 299 Query: 310 GEL---GQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLP 366 G++ F++ + LG L + +++ ERL LL V Sbjct: 300 GDMVLVNAFMIQLYIPLNFLGVLYR---EIKQSLADMERLFSLLEEHREVAD---SADAK 353 Query: 367 PRTANGAALQIDALDFHYPSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRF 426 P GA L D +DF Y L VQ G T AVVG SG+GK+TL +LL RF Sbjct: 354 PLKTQGANLHFDHVDFSYER--NRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRF 411 Query: 427 YDPQQGNIRLDGVDIRYLTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAA 486 YD G IR+DG D+R +T LR AIGIVPQDTV+F+ NI +G+P A+ +++AA Sbjct: 412 YDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAA 471 Query: 487 AQMAAAHEFIERLPNGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDA 546 A+ A H+FIE LP+GY +GERG++LSGG++QR+AIAR LLK+P +L+ DEATSALD+ Sbjct: 472 AKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDS 531 Query: 547 ESERLVQSALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYA 606 +E+ +Q LE RTTLVIAHRL+T+ A +I+VL+HGRIVE GTHA L+ GLYA Sbjct: 532 RAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYA 591 Query: 607 GL 608 + Sbjct: 592 QM 593 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 212/582 (36%), Positives = 314/582 (53%), Gaps = 15/582 (2%) Query: 38 LRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFL 97 +++L PYKK+ +A +A+IV AA VPY F+ ++D GF K A + L + Sbjct: 6 MKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVG---KPAFSLWLVPV 62 Query: 98 ALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLT 157 A+ G+ + G+AT YM++W+ R+ +LR ++A ++ F+ T G+V++ + Sbjct: 63 AVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMM 122 Query: 158 ADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVFYGRRV 217 + I +V + LR+AL G + L + LT + +V+L V L + G+R+ Sbjct: 123 FEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRL 182 Query: 218 RKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIRARS 277 +KL+R S A+ + + E A ++ F ++ E RF + E M A S Sbjct: 183 KKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFS 242 Query: 278 LLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ 337 + L+ A+ V+ + G ++ G FI ++ L L+E+ G Q Sbjct: 243 STVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQ 302 Query: 338 RAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAAL-QIDALD--FHYPSRPGSASLS 394 R A E + L+ + E++ G A Q+D ++ F YP A L Sbjct: 303 RGMAAAEEVYKLIDKTT--------ERITGEALAGRATGQLDFVEVGFAYPGHEQLA-LK 353 Query: 395 GFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIG 454 +L V+ GET+A VG SG GK+TL L+ FY G IRLDG DI ++L LR I Sbjct: 354 NINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIA 413 Query: 455 IVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVRL 514 +V Q+TV+F NI +G + A V AA + A + + LP G Q LG+ G RL Sbjct: 414 MVNQNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRL 473 Query: 515 SGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLAT 574 SGGQRQR+AIARA+ K+ P+L+LDEATSALD ESER VQ+AL+ M GRTT VIAHRL+T Sbjct: 474 SGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLST 533 Query: 575 VQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQFETQ 616 ++RADRI+VL HG+I E GTH L+ + G+YA L LQF Q Sbjct: 534 IERADRIVVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQ 575 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 275 bits (704), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 195/598 (32%), Positives = 311/598 (52%), Gaps = 29/598 (4%) Query: 25 SSSPTARKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAA 84 S + A++S+ +P + Y+K L +V L P F+ ++D Sbjct: 136 SKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMD---KVL 192 Query: 85 GSKSASHINLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFF 144 + + +N+ + L V T +R + + ++ +L S +++H+++ +F Sbjct: 193 VNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYF 252 Query: 145 ETTKTGEVLSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLA 204 + + G+ ++R+ + L G ++++ L F ML+ S L+ I++ + Sbjct: 253 QVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWY-SVSLSLIVLASIP 311 Query: 205 AVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVER 264 VL + + +R+ ++ A+ + E L M TV+A E R+ Q ++ Sbjct: 312 VYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEP----RWQQKWDK 367 Query: 265 AFQTAMERIRARSLLTVVAILLVFGAI--------VFVLWLGAHAVMEGSMSGGELGQFI 316 + A L T LL GA+ V ++WLGA V++ MS GEL F Sbjct: 368 QLAAYV----AAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFN 423 Query: 317 LYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQ 376 + A VA + L+++ D Q+ + RL D+L A++ V +LP NGA + Sbjct: 424 MLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGN--RTRLP--RVNGA-IS 478 Query: 377 IDALDFHY-PSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIR 435 D + F Y P P + G SL ++PGE + +VG SG+GK+TL +L+ R Y + G I Sbjct: 479 FDLVSFRYRPETP--EVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRIS 536 Query: 436 LDGVDIRYLTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEF 495 +DG DI + LR IG+V Q+ +FS + +NI P ++I AA++A AH+F Sbjct: 537 VDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDF 596 Query: 496 IERLPNGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSA 555 I LP GY +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q Sbjct: 597 ICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDN 656 Query: 556 LEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVAR-NGLYAGLAALQ 612 + GRT L+IAHRL+ V+ ADRIIV+E GR+ E+G+H EL+ G+YA L LQ Sbjct: 657 MRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,591,048 Number of extensions: 60910 Number of successful extensions: 670 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 530 Number of HSP's successfully gapped: 132 Length of query: 616 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 525 Effective length of database: 1,188,985 Effective search space: 624217125 Effective search space used: 624217125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)