BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3388.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436...   477   e-136

>gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  477 bits (1228), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/324 (73%), Positives = 264/324 (81%), Gaps = 2/324 (0%)

Query: 1   LAQPALMSSHWETPASPRQQHAELAAALMAPQAFIAPKYFYDALGSKLFEAICALPEYYP 60
           +AQPAL+ +  ++ +  RQ+ AEL   L AP AFI+PKYFYD LGSKLFEAICALPEYYP
Sbjct: 1   MAQPALIPADLDSLSEDRQRRAELVTGLTAPAAFISPKYFYDVLGSKLFEAICALPEYYP 60

Query: 61  TRTEAAIFAAHQEAIAAAVGHGCILIDLGAGNCAKAASLFEVLQPRQYVPVDISGDFLQQ 120
           TRTEAAIFA H++ IAAAVG    LIDLGAGNCAKAASLF  L+PRQYVPVDIS  FLQQ
Sbjct: 61  TRTEAAIFAEHRDEIAAAVGQDACLIDLGAGNCAKAASLFAALRPRQYVPVDISAQFLQQ 120

Query: 121 SVQGLQRRFAQLPMQPLVMDFSTTLDLPDTVQAEQRLFFYPGSSLGNFDARQALAFLRRL 180
           SV GLQRRF  +PM PL MDFS+TL LP  VQ E+RLFFYPGSSLGNFD  +AL FLRRL
Sbjct: 121 SVAGLQRRFPDIPMLPLGMDFSSTLALPAQVQRERRLFFYPGSSLGNFDRDEALVFLRRL 180

Query: 181 RAALPAGSNDGGVLIGLDLVKEVAVLEAAYDDALGVTAAFNLNVLHHVNGLLGADFDPRH 240
           RAALP  +  GGVL+GLDLVK  AVLEAAYDDALGVTAAFNLN L+H+NGLLGADF+ R 
Sbjct: 181 RAALPDAA--GGVLLGLDLVKPSAVLEAAYDDALGVTAAFNLNALNHINGLLGADFNARD 238

Query: 241 WRHVAFYNIHQQRIEMYLEARRDLIVRWPGVRRTFHQGERIHTEYSHKFTEQDILSLLEQ 300
           WRH+AFY+  QQR+EM+LEARRDLIVRWPG RRTF QGERIHTE SHKF   +I  LL Q
Sbjct: 239 WRHLAFYDEAQQRVEMHLEARRDLIVRWPGGRRTFRQGERIHTENSHKFRADEIADLLAQ 298

Query: 301 AGFGACRMWFDERRWFTVCHARAR 324
           AGFG C+MW D +RWF VCHAR R
Sbjct: 299 AGFGDCQMWCDPQRWFAVCHARPR 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,916
Number of extensions: 29343
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)