BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3385.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312729|ref|YP_003776821.1| hypothetical protein Hsero_3433...    78   2e-15

>gi|300312729|ref|YP_003776821.1| hypothetical protein Hsero_3433
           [Herbaspirillum seropedicae SmR1]
          Length = 79

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 50/67 (74%)

Query: 339 HTGRALQADRRTTAIYVSISAAAGCRIAATLTVGNSWWLGLSAVCWSLAFLLFVLRYGPL 398
            TGR L AD  T  I++ IS AA CRIAATL++ N++ L LSA+CW+LAFLLFV RYG  
Sbjct: 13  STGRTLSADGSTRIIFLIISVAAFCRIAATLSLSNAYLLQLSALCWALAFLLFVARYGAW 72

Query: 399 LNRPRLR 405
           L RPRLR
Sbjct: 73  LLRPRLR 79


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,095,226
Number of extensions: 42763
Number of successful extensions: 248
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)