BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3382.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...   390   e-110
gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...    68   7e-13

>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  390 bits (1002), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/230 (84%), Positives = 206/230 (89%), Gaps = 9/230 (3%)

Query: 5   AQEEDEDLPVQDAASLGVIGCHHCGTVWEAAHQHEPCGVCHAPLHVRKIDSLNRTWALLI 64
           A++  +DLPVQ AASL VIGCHHCGTVW+ A   E CGVCHAPLHVRKIDSL RTWALLI
Sbjct: 16  AEDGAQDLPVQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLHVRKIDSLTRTWALLI 75

Query: 65  AACIMYIPANLMPVMVTSTLFDEQRDTILSGVIYFWTSGEWGLAMVVFIASFLVPLFKLV 124
           AACIMYIPANLMPVMVT TLFDEQRDTILSGVIYFWTSGEWGLA+VVF+ASFLVPLFKLV
Sbjct: 76  AACIMYIPANLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKLV 135

Query: 125 ALGILVFSARRRSRWQRLQRAKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANVHAGI 184
           ALGILVFSARRRSRWQRLQRAKLYR+VEAIGRWSMLDVFVVSVLTGLVKIHGFAN+HAGI
Sbjct: 136 ALGILVFSARRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAGI 195

Query: 185 GIAAFGAVVVLTMLASLAFDPRLIWDETDRSEASIPPHSEDTAHKPQETA 234
           GIAAFGAVVVLTMLASLAFDPRLIWD+ D +    PP     A+K QE A
Sbjct: 196 GIAAFGAVVVLTMLASLAFDPRLIWDDADPT----PP-----ANKKQEPA 236


>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 67.8 bits (164), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 9/202 (4%)

Query: 22  VIGCHHCGTVWE----AAHQHEPCGVCHAPLHVRKIDSLNRTWALLIAACIMYIPANLMP 77
           +I C  C  V++       +   C  CHA L       L     L I A I+++ AN+ P
Sbjct: 7   LIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFVIANVFP 66

Query: 78  VMVTSTLFDEQRDTILSGVIYFWTSGEWGLAMVVFIASFLVPLFKLVALGILVFSARRRS 137
           + VT  L     DT L G +   T    G++ V  +      LF ++ L +L++     S
Sbjct: 67  I-VTIELQGLSADTTLMGAVVALTRD--GMSEVALLVLATTLLFPMIQLFVLLYLLMPGS 123

Query: 138 RWQRLQR-AKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANVHAGIGIAAFGAVVVLT 196
           R QR      L R+++    W M++VF++ +L  L+K+   A V  G  + +FG + VL 
Sbjct: 124 RRQRPPGFVLLLRLMQVARPWGMIEVFMLGILVALIKLSNIAEVIPGPALWSFGGLTVL- 182

Query: 197 MLASLAFDPRLIWDETDRSEAS 218
           +   ++F+PR +W   ++ + S
Sbjct: 183 LTVVVSFNPRYLWHLWEQHQGS 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,084
Number of extensions: 21843
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)