BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3381.p
         (542 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein [H...  1039   0.0  

>gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/542 (93%), Positives = 528/542 (97%)

Query: 1   MTPPDTPEDKPALLQPRRVRQRNWLPSLVWLIPIIAAIVGLTLVAKILVDRGPMVTVSFR 60
           MTPPDTPEDKPALLQPRR RQRNWLPSLVWLIPIIAA+VGL+LVAKIL+DRGP+VTV+FR
Sbjct: 1   MTPPDTPEDKPALLQPRRTRQRNWLPSLVWLIPIIAAVVGLSLVAKILIDRGPLVTVTFR 60

Query: 61  SAEGLEAGKTKVKYKDVEIGQVQTLKLASDRSHVLVGIQLNQEASGFNAEDTRFWVVRPR 120
           SAEGLEAGKT+VKYKDVEIGQVQTLKLA DRSHVLVGIQLN+EA+GF+AEDTR+WVVRPR
Sbjct: 61  SAEGLEAGKTRVKYKDVEIGQVQTLKLAPDRSHVLVGIQLNKEAAGFDAEDTRYWVVRPR 120

Query: 121 IAASGISGLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDVSGRQFVLHTDDLGSL 180
           IAASGISGLGTLLSGAYIGAD GASE++KK+FVGLEQPPIVTRD SGRQFVLHT+DLGSL
Sbjct: 121 IAASGISGLGTLLSGAYIGADPGASEQSKKSFVGLEQPPIVTRDASGRQFVLHTNDLGSL 180

Query: 181 DIGSPIFYRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQGSRFWHASGFDMELNA 240
           DIGSPIFYRRIKVGQVVAYDLD+DGRGVTLRIFVNAPYDKFVTQ SRFWHASGFDMELNA
Sbjct: 181 DIGSPIFYRRIKVGQVVAYDLDADGRGVTLRIFVNAPYDKFVTQTSRFWHASGFDMELNA 240

Query: 241 SGFKLHTQALSTVVLGGIAFRDRDEYQTSAPAKEGTEYQLVEDESAAMKEPDGVPQTAVL 300
           SGFKLHTQAL+TVVLGGIAFRDRDE + SAPAKEG EY LVEDESAAMKEPDGVPQTA+L
Sbjct: 241 SGFKLHTQALATVVLGGIAFRDRDEDRVSAPAKEGAEYALVEDESAAMKEPDGVPQTALL 300

Query: 301 YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKQRGEFRMPVMVQIYPDRLGRRFQEET 360
           YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDK RGEFRMPV+VQIYP+RLGRRFQEET
Sbjct: 301 YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKARGEFRMPVVVQIYPERLGRRFQEET 360

Query: 361 DGQRRSNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTI 420
             QRRSNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTI
Sbjct: 361 GEQRRSNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTI 420

Query: 421 PGSLDELQQQLSDIAGKLSKVPFDEIGHDLQTTLKTLNKTLSTAEQTAAHINNDIAPEMQ 480
           PGSLDELQQQLSDIAGKLSKVPFDEIG DLQTTLKTLNKTLSTAEQTAA INNDIAPEMQ
Sbjct: 421 PGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLSTAEQTAARINNDIAPEMQ 480

Query: 481 AAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ 540
           AAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ
Sbjct: 481 AAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ 540

Query: 541 EP 542
           EP
Sbjct: 541 EP 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,629,615
Number of extensions: 67498
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 452
Effective length of database: 1,193,720
Effective search space: 539561440
Effective search space used: 539561440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)