BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3371.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312715|ref|YP_003776807.1| lytic murein transglycosylase [...   972   0.0  
gi|300311684|ref|YP_003775776.1| soluble lytic murein transglyco...    59   1e-09

>gi|300312715|ref|YP_003776807.1| lytic murein transglycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 509

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/494 (95%), Positives = 483/494 (97%), Gaps = 1/494 (0%)

Query: 1   MQRTLKQFAIAALFCAGTPLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK 60
           MQRTLKQ AIAALFCAG PLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK
Sbjct: 1   MQRTLKQLAIAALFCAGAPLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK 60

Query: 61  GFGIPDLDNALVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120
           GFGIPDLDN+LVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE
Sbjct: 61  GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120

Query: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180
           SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG
Sbjct: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180

Query: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPAETRNYVPKLQAVKNIIANP 240
           DWQLALAAYNWGEGSVQRAVNRNLAAG+PIDFNTLSAQMP ETRNYVPKLQAVKNIIANP
Sbjct: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGMPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP 240

Query: 241 AAYDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSVDEFKALNPQFNRPVIIGGDDTK 300
           AA+DIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELS+DEFKALNPQFNRPVIIGG+DTK
Sbjct: 241 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK 300

Query: 301 ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360
           ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR
Sbjct: 301 ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360

Query: 361 MVLKAGSTILVPKNEETAALDTDLTPELADNARLAIAPDVPETRRIYVKAGKRDTLAGIA 420
           MVLKAGSTILVPK EETAALDTDLTPE+ADNARLAIAPDVPETRRIYVKAGKRDTLAGIA
Sbjct: 361 MVLKAGSTILVPKTEETAALDTDLTPEIADNARLAIAPDVPETRRIYVKAGKRDTLAGIA 420

Query: 421 GRYHVSVAQLKEWNGLKRDTLAAGQSLQLHVPNAAARSTPTRVASHHRAAPARRQVASAK 480
            RY V+VAQ+KEWNGLKRDTLAAGQSLQL VPN A  +T TRVASHHRAAPARRQVASAK
Sbjct: 421 SRYRVTVAQIKEWNGLKRDTLAAGQSLQLQVPNVAGHAT-TRVASHHRAAPARRQVASAK 479

Query: 481 APVRKAAPAPARKV 494
           APVRKAAPAPARKV
Sbjct: 480 APVRKAAPAPARKV 493


>gi|300311684|ref|YP_003775776.1| soluble lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 10/97 (10%)

Query: 108 GMPTE-LALLPFIESAFNPEAL-----STAKAAGMWQFIPSTGRDYNLKQNMFTDERRDV 161
           GMP E LA   + ES +NP  +     S   A G+ QF+P+T R+    +    D +R +
Sbjct: 80  GMPAEILAWQLWKESRYNPAIINGTIKSRVGAMGIGQFMPATAREELGSEAAALDPQRAI 139

Query: 162 LASTDAALTYLQKLYGMFGDWQLALAAYNWGEGSVQR 198
                    Y+ KLY   G W+LALAAYNWG G+VQR
Sbjct: 140 ----PGVAAYMAKLYRKTGSWKLALAAYNWGIGNVQR 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,484,447
Number of extensions: 61849
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)