BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3364.p (359 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312699|ref|YP_003776791.1| hypothetical protein Hsero_3402... 597 e-172 gi|300313106|ref|YP_003777198.1| hypothetical protein Hsero_3812... 509 e-145 gi|300312706|ref|YP_003776798.1| hypothetical protein Hsero_3409... 500 e-143 gi|300313103|ref|YP_003777195.1| hypothetical protein Hsero_3809... 500 e-143 gi|300312705|ref|YP_003776797.1| hypothetical protein Hsero_3408... 487 e-139 >gi|300312699|ref|YP_003776791.1| hypothetical protein Hsero_3402 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 597 bits (1540), Expect = e-172, Method: Compositional matrix adjust. Identities = 271/357 (75%), Positives = 315/357 (88%) Query: 1 MDERVFSYKAGSQIPAWDLRHRLSIHEPVSPECKDTGTLFRLNSTYMDVTDQPHRDRQWH 60 MDER+FSYKAG+ IPAWDL HRLSIHEPV+PECKDTGT+FR+NSTYMDVTDQP+RDRQWH Sbjct: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVFRVNSTYMDVTDQPYRDRQWH 60 Query: 61 AAGVLTSCIGVIAPLWLIGYTLIHPPREFVLSLGIAYFVLMGGSAIFAYLTFKYGRDEFF 120 A GVLTSCIGV APL LIGY LIHPPREFV +L I + VL+ SA FAYLT+KYG+DEFF Sbjct: 61 AGGVLTSCIGVAAPLGLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKDEFF 120 Query: 121 SLKRRPIRFNRKEKKVYAIRHRRFLAKPDQGDFTWEIAWDEKAIFCIHRRMVNNRPAYHI 180 +LKRRPIRF+RKEKK+YAIRHRRF +KP QGDF WEIAW+E AIFCIH+R+VN RP+YHI Sbjct: 121 ALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSYHI 180 Query: 181 RHYEVDEHGNIIRAFAIGRTWEGNENLQSLLSQWNYWCWYMNRGPAELPKPPLFYKERET 240 RHYEVD+ GN+IRAF+IGRTWEG NLQ LLSQWNYWCWYMN GPA+LP+PPL++KE ET Sbjct: 181 RHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEHET 240 Query: 241 MLESFLFCLYEFAPYASVAYRVSMMPFILLLTAHRLLALWTCRNPVWPLAVEEVSSIEPD 300 LESFLFCLY+F ASVAYR+S+MPF+LL+T+HRL+ALWTCR+PVWP A+E +S+IEP Sbjct: 241 ALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIEPG 300 Query: 301 DPFDEPRGSTPSGWGDTLLAIERGEYPHDPGRGIDAWRGEKDPVANAHLWAQDIPPR 357 DP+DEPRG TP+GWG+T AIERGEYP+DP + WRG+KDP NA LWA+DIPPR Sbjct: 301 DPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPR 357 >gi|300313106|ref|YP_003777198.1| hypothetical protein Hsero_3812 [Herbaspirillum seropedicae SmR1] Length = 360 Score = 509 bits (1311), Expect = e-145, Method: Compositional matrix adjust. Identities = 235/356 (66%), Positives = 280/356 (78%), Gaps = 3/356 (0%) Query: 1 MDERVFSYKAGSQIPAWDLRHRLSIHEPVSPECKDTGTLFRLNSTYMDVTDQPHRDRQWH 60 MDER+F +K G IP WDL+HRLSI+ PV PECKDT T+FR+NST+MDVTDQP R+RQW Sbjct: 1 MDERIFQFKTGRPIPEWDLKHRLSINNPVGPECKDTSTIFRINSTFMDVTDQPFRERQWL 60 Query: 61 AAGVLTSCIGVIAPLWLIGYTLIHPPREFVLSLGIAYFVLMGGSAIFAYLTFKYGRDEFF 120 A VL SC+GV+ +W T + P + LG Y +++ + +F Y F++GRDEFF Sbjct: 61 AGAVLVSCLGVVGGMWSYYLTRVLYPDAGGI-LGDLYCLVI--TFLFGYFAFRHGRDEFF 117 Query: 121 SLKRRPIRFNRKEKKVYAIRHRRFLAKPDQGDFTWEIAWDEKAIFCIHRRMVNNRPAYHI 180 SLKRRPIRFNRKEKK+YAIR RRF AKP QGD TWE+ WDE AIFCIHR N++ YHI Sbjct: 118 SLKRRPIRFNRKEKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGSSNHKNTYHI 177 Query: 181 RHYEVDEHGNIIRAFAIGRTWEGNENLQSLLSQWNYWCWYMNRGPAELPKPPLFYKERET 240 RHYEVDE GN++RAFAIGR WE ENLQ LLSQWNYWCWYMNRGP +LPKPPLF+ ERE+ Sbjct: 178 RHYEVDEEGNVVRAFAIGRKWEQKENLQGLLSQWNYWCWYMNRGPEDLPKPPLFFCERES 237 Query: 241 MLESFLFCLYEFAPYASVAYRVSMMPFILLLTAHRLLALWTCRNPVWPLAVEEVSSIEPD 300 +ESFLFCLY+F A AYR++MMPFILLLT+HRL+ALWTCR+P+WP AVE+VS + P Sbjct: 238 AMESFLFCLYDFGASAGAAYRIAMMPFILLLTSHRLMALWTCRDPIWPAAVEKVSVVRPG 297 Query: 301 DPFDEPRGSTPSGWGDTLLAIERGEYPHDPGRGIDAWRGEKDPVANAHLWAQDIPP 356 DPFDEP GSTP GWGDTLLAI R EYP+DP + ++ W GEKDP NA LW++D PP Sbjct: 298 DPFDEPSGSTPVGWGDTLLAINRNEYPYDPQKEVNEWLGEKDPAVNALLWSEDTPP 353 >gi|300312706|ref|YP_003776798.1| hypothetical protein Hsero_3409 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 500 bits (1287), Expect = e-143, Method: Compositional matrix adjust. Identities = 230/361 (63%), Positives = 281/361 (77%), Gaps = 8/361 (2%) Query: 1 MDERVFSYKAGSQIPAWDLRHRLSIHEPVSPECKDTGTLFRLNSTYMDVTDQPHRDRQWH 60 MDER+F +K G IP WD +HRLSI +PV PECKDTGT+FR+NSTYMDVTDQP+ DRQW Sbjct: 1 MDERIFQFKKGQPIPEWDWQHRLSIDQPVGPECKDTGTIFRINSTYMDVTDQPYMDRQWQ 60 Query: 61 AAGVLTSCIGVIAPLWL----IGYTLIHPPREFVLSLGIAYFVLMGGSAIFAYLTFKYGR 116 A GVL +CIG+ A L + ++LI +L++ I F L + A++ FKYGR Sbjct: 61 AGGVLVACIGIAAFLSFSISAVRHSLITRQSIPMLTIFIVVFAL----SALAFIAFKYGR 116 Query: 117 DEFFSLKRRPIRFNRKEKKVYAIRHRRFLAKPDQGDFTWEIAWDEKAIFCIHRRMVNNRP 176 DEFF+LKRRPIRFNRKEKK+YA+R RRF AKP QGD TWEI W+E +IFCIHR N++ Sbjct: 117 DEFFALKRRPIRFNRKEKKIYAVRRRRFFAKPGQGDVTWEIPWNEHSIFCIHRGTSNHQN 176 Query: 177 AYHIRHYEVDEHGNIIRAFAIGRTWEGNENLQSLLSQWNYWCWYMNRGPAELPKPPLFYK 236 YHIRHYE+DE G ++RAFA+GR WE ENLQ LLSQWNYWCWYMNRGPAELPKPPLF+ Sbjct: 177 TYHIRHYELDEDGKVVRAFALGRKWEAKENLQGLLSQWNYWCWYMNRGPAELPKPPLFFS 236 Query: 237 ERETMLESFLFCLYEFAPYASVAYRVSMMPFILLLTAHRLLALWTCRNPVWPLAVEEVSS 296 ERE ESFLFCLY+F AS +YR++MMPFIL+LT+HRL+A+WTCR+P+WP +VE+ Sbjct: 237 ERENTQESFLFCLYDFGLRASASYRIAMMPFILVLTSHRLMAMWTCRDPIWPKSVEDFCV 296 Query: 297 IEPDDPFDEPRGSTPSGWGDTLLAIERGEYPHDPGRGIDAWRGEKDPVANAHLWAQDIPP 356 +EPDDP+D+P G+TP GWG T+LA +R +YPHDP ++ WRGEKDP NA LWA DIPP Sbjct: 297 LEPDDPYDQPNGNTPIGWGATVLAKQREQYPHDPKCEMETWRGEKDPALNALLWAADIPP 356 Query: 357 R 357 R Sbjct: 357 R 357 >gi|300313103|ref|YP_003777195.1| hypothetical protein Hsero_3809 [Herbaspirillum seropedicae SmR1] Length = 369 Score = 500 bits (1287), Expect = e-143, Method: Compositional matrix adjust. Identities = 232/356 (65%), Positives = 271/356 (76%) Query: 1 MDERVFSYKAGSQIPAWDLRHRLSIHEPVSPECKDTGTLFRLNSTYMDVTDQPHRDRQWH 60 MDERVF YKAG IP WD HRL I +PV P C+DT T+FR+NSTYMDVTDQP RDRQW Sbjct: 1 MDERVFRYKAGEPIPEWDWTHRLPIDQPVGPVCQDTSTIFRINSTYMDVTDQPFRDRQWQ 60 Query: 61 AAGVLTSCIGVIAPLWLIGYTLIHPPREFVLSLGIAYFVLMGGSAIFAYLTFKYGRDEFF 120 + VL +C G ++ LWL G+ L+HPP EF ++L + + V+ G +F Y+ + GRDE F Sbjct: 61 SGAVLIACFGALSFLWLAGFMLLHPPEEFAITLILPWLVVFLGLGLFGYIAVRLGRDELF 120 Query: 121 SLKRRPIRFNRKEKKVYAIRHRRFLAKPDQGDFTWEIAWDEKAIFCIHRRMVNNRPAYHI 180 SL R+PIRFNRKEKK+YAIR RRF A+P QGD TWE+ WDE AIFCIHR NN+ AYHI Sbjct: 121 SLSRKPIRFNRKEKKIYAIRRRRFFAEPGQGDITWEVPWDENAIFCIHRGSANNKYAYHI 180 Query: 181 RHYEVDEHGNIIRAFAIGRTWEGNENLQSLLSQWNYWCWYMNRGPAELPKPPLFYKERET 240 RHYEVDE GN++RAF+IGR WEG E L LLSQWNYWCWYMN GP ELPKP LF+KE+E Sbjct: 181 RHYEVDEDGNVVRAFSIGRKWEGQECLDGLLSQWNYWCWYMNHGPEELPKPLLFFKEKED 240 Query: 241 MLESFLFCLYEFAPYASVAYRVSMMPFILLLTAHRLLALWTCRNPVWPLAVEEVSSIEPD 300 MLESFLFC+Y+F AS AYR++MMPFIL +T RL+ALWTCR+PVWP V VS IE D Sbjct: 241 MLESFLFCMYDFGMRASGAYRITMMPFILFMTCLRLIALWTCRDPVWPDYVGRVSGIEFD 300 Query: 301 DPFDEPRGSTPSGWGDTLLAIERGEYPHDPGRGIDAWRGEKDPVANAHLWAQDIPP 356 DP DEPRGSTP GW +T AI R +YP R ++ WRGEKDPV NA LWA DIPP Sbjct: 301 DPHDEPRGSTPIGWAETTHAINRKDYPDGAKRTMENWRGEKDPVLNALLWAADIPP 356 >gi|300312705|ref|YP_003776797.1| hypothetical protein Hsero_3408 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 487 bits (1254), Expect = e-139, Method: Compositional matrix adjust. Identities = 224/360 (62%), Positives = 281/360 (78%), Gaps = 8/360 (2%) Query: 1 MDERVFSYKAGSQIPAWDLRHRLSIHEPVSPECKDTGTLFRLNSTYMDVTDQPHRDRQWH 60 MDER+F +K+G IP WDLRHRL I V PE KD+ T+FR+NS+YMDVTDQP+RDRQW Sbjct: 1 MDERIFQFKSGQAIPEWDLRHRLHIQRSVGPERKDSSTIFRINSSYMDVTDQPYRDRQWQ 60 Query: 61 AAGVLTSCIGVIAPLW----LIGYTLIHPPREFVLSLGIAYFVLMGGSAIFAYLTFKYGR 116 AAGVLT +G+ A L+ ++ + +P + ++S+ F++M ++ + +FKYGR Sbjct: 61 AAGVLTFLLGIAASLFYGTSVMQNSSNNPDSDPIMSI----FLVMAAISMLGFFSFKYGR 116 Query: 117 DEFFSLKRRPIRFNRKEKKVYAIRHRRFLAKPDQGDFTWEIAWDEKAIFCIHRRMVNNRP 176 DEFFSLKRRPIRF+RK+KK+YAIR RRF AKP QGD TWE+ WDE AIFCIHR +V++R Sbjct: 117 DEFFSLKRRPIRFDRKQKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGVVHHRH 176 Query: 177 AYHIRHYEVDEHGNIIRAFAIGRTWEGNENLQSLLSQWNYWCWYMNRGPAELPKPPLFYK 236 YHIRHYEVD+ GN++RAF+IGR WEG+E+L+ LLSQWNYWCWYMN GPAELPKP LF+K Sbjct: 177 VYHIRHYEVDQDGNVLRAFSIGRKWEGDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFK 236 Query: 237 ERETMLESFLFCLYEFAPYASVAYRVSMMPFILLLTAHRLLALWTCRNPVWPLAVEEVSS 296 E+E MLESFLFC+Y+F AS AYR+ MMP ILL+T+HRL+ALWTCR P+WP AV +VS+ Sbjct: 237 EKENMLESFLFCMYDFGMRASAAYRIIMMPAILLMTSHRLMALWTCRAPIWPDAVVKVSA 296 Query: 297 IEPDDPFDEPRGSTPSGWGDTLLAIERGEYPHDPGRGIDAWRGEKDPVANAHLWAQDIPP 356 IEPDDPFD+P G TP GW +T AI+R EYP R + W GEK+P NA LWA+D+PP Sbjct: 297 IEPDDPFDQPSGPTPVGWAETTHAIDRNEYPDGDKREMKNWSGEKNPTVNALLWAKDVPP 356 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.141 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,231,200 Number of extensions: 52594 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 8 Length of query: 359 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 273 Effective length of database: 1,212,660 Effective search space: 331056180 Effective search space used: 331056180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)