BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3362.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312703|ref|YP_003776795.1| hypothetical protein Hsero_3406...   369   e-103

>gi|300312703|ref|YP_003776795.1| hypothetical protein Hsero_3406
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/243 (73%), Positives = 206/243 (84%)

Query: 22  MSALSPTQQKWVSTGLRFAPLEDEPPILCAWLDTDADLELLKRAITRFLIGPGPEGRAVY 81
           M+ L+  QQ+W++T LR AP  +EPPILCAWL++ AD E L R++TRFLIGPG E R +Y
Sbjct: 1   MATLTADQQQWMTTALRSAPHAEEPPILCAWLESAADPERLVRSVTRFLIGPGVEDRQIY 60

Query: 82  WRYYDPRVFALTMHLFSAEQSSALLGPVTQWRFPWCGHWWSVAGPGAEIDVLGGSRPAWP 141
           WRYYDPRV ALT+ LFS EQ+ ALLGPVTQWRFPW GHWWSV GPG E+DVLGGSRPAWP
Sbjct: 61  WRYYDPRVLALTLQLFSDEQTRALLGPVTQWRFPWSGHWWSVTGPGEEVDVLGGSRPAWP 120

Query: 142 TASQWSSLAHCDVLDMVLRRLTDNLADRTPSEILLYQRRAEAALMRGRQVLKLTDPGELM 201
            ASQW SLAHCDVLD VLR+L + LA  TP EILLY RR ++ALMR R+VLKLTDPGEL 
Sbjct: 121 DASQWHSLAHCDVLDRVLRQLPEKLAACTPPEILLYLRRGDSALMRARKVLKLTDPGELT 180

Query: 202 EYALLCLRYGSAFLDHPPLYDAWPALARGKINWSTLLQRLGPDDYRQMEAVRHLMSPSTG 261
           EYAL CLRYGSAFLDHPPL+ AWPALA G+++W+ LLQRLGPDDYRQM+AVRHL+SP+TG
Sbjct: 181 EYALHCLRYGSAFLDHPPLHGAWPALASGELSWNALLQRLGPDDYRQMDAVRHLISPTTG 240

Query: 262 AAQ 264
           AA+
Sbjct: 241 AAR 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,030
Number of extensions: 40942
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)