BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3361.p (826 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 1453 0.0 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 381 e-106 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 365 e-102 gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 274 2e-74 gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 261 1e-70 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 1453 bits (3762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/826 (84%), Positives = 761/826 (92%), Gaps = 2/826 (0%) Query: 1 MPHRTTRWEAIIRQRQHNRILQLSFIHDDGPAAALLVNRLEASEALSRDFSYTLELLSDD 60 M TTRW+ + RQRQHNRILQL FI+DD P A LL+NRLEASEALSRD+ YTLELLSDD Sbjct: 1 MHSHTTRWDKLTRQRQHNRILQLFFINDDAPDAELLINRLEASEALSRDYVYTLELLSDD 60 Query: 61 AGIELHAMMGKLLCVTLTRADGTHRYFTGYVDRFALLRSDGGIAFYEARLAPWLALLAVR 120 A I L AMMGKLL V LTRADGT R+FTGYV+RFA LRSDGGIAFYEARL PWLA LA R Sbjct: 61 AHIPLDAMMGKLLRVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASR 120 Query: 121 RNNRIFHQLSLEGLSAELFNDYRTHAHWDCQLRHGDPVRTEMFQFNESDSNMLHRRWEEA 180 NNRIFH LSLEGLSA +F Y HA WDCQLRHGDPVRTEMFQF+ESDSN+LHRRWE+A Sbjct: 121 HNNRIFHHLSLEGLSAAIFRAYPMHARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDA 180 Query: 181 GWHYYYEHQANGHQLRLADDSTYAKPIDGTGQIPFQHHGGAIEEDGIAQWSTVRQFQPSS 240 GWHY+YEHQA+GHQLRL+DDSTYAKPIDGTGQ+PFQ HGGAIEEDG+AQWS VRQFQPSS Sbjct: 181 GWHYHYEHQADGHQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSS 240 Query: 241 TRLSSYDFKAAQPQQVDVPTLNKQGAVVPVEHYEYTGAYGFSDREDGDRQSRLRIEEFEA 300 TRLSSYDFKAA+PQ+V+VPTLNKQGAV+ VEHYEY GAYGF++R+DGDRQSRLR+EEFEA Sbjct: 241 TRLSSYDFKAARPQEVEVPTLNKQGAVLQVEHYEYAGAYGFANRDDGDRQSRLRMEEFEA 300 Query: 301 SAQLFEGAGNCRLLQPGRSFRLTGHFSKQPTRGHDDGTRDQEFLIVSVEHSATNNYLQDA 360 +AQ+FEG GNCR LQPGR+FRLTGHFS + D RD E LI+SVEHSATNNYLQD+ Sbjct: 301 AAQVFEGTGNCRFLQPGRTFRLTGHFSG--SAASHDHDRDPELLIISVEHSATNNYLQDS 358 Query: 361 ETPAFYTNRVRCVRKHIPWHPGRGYYSQPTLLHGIQTATVVGPAGENLHVDEYGRVKVQF 420 ETP FY NRVRCVRK IPW PGR YYSQPT L GIQTATVVGPAGENLHVDEYGRVKVQF Sbjct: 359 ETPPFYANRVRCVRKRIPWRPGRSYYSQPTALLGIQTATVVGPAGENLHVDEYGRVKVQF 418 Query: 421 HWDQIGRNDEHSSAWMRVASSWAGSQQGLVAVPRIGQLVIVQWLGGHPDRPIITGSVVNQ 480 HWDQIGRNDE SSAW+RVASSW+G +QGLV+VPRIGQLVIVQWLGGHPDRPIITGSVVNQ Sbjct: 419 HWDQIGRNDERSSAWLRVASSWSGGEQGLVSVPRIGQLVIVQWLGGHPDRPIITGSVVNQ 478 Query: 481 RNMPPWELPSQAALSGLRSRELAPQAGNAPGGRSGHVLFDDTHDAIQTQVRSDAFDSQLA 540 NMPPW LPSQ+ALSG+RSRELAP+ GNAPGGRSGHVLFDDTH+AIQTQVRSDAFDSQLA Sbjct: 479 LNMPPWTLPSQSALSGMRSRELAPRTGNAPGGRSGHVLFDDTHEAIQTQVRSDAFDSQLA 538 Query: 541 LGHVTRIERHAGRQEARGEGFELRTDAHGVLRAAKGLVLTSEPRPKARGHITDMGETVAR 600 LGH+TRIERHAGRQ+ARGEGFELRTDAHGV+RAA+GL+LTSEPRPKA H TD+GETVAR Sbjct: 539 LGHITRIERHAGRQDARGEGFELRTDAHGVVRAAQGLLLTSEPRPKAHRHTTDIGETVAR 598 Query: 601 LTQARGTIESLSKLAQEHQAQDRDADQHDAAQAIEAQNEAIKGEGSAQEGRFPELSEPHL 660 LTQARGT+ESLSKLAQEH+AQD++ADQ+DAAQAI+AQN+AIKG+G+A+ GRFPEL+EPHL Sbjct: 599 LTQARGTVESLSKLAQEHEAQDKNADQYDAAQAIKAQNDAIKGDGAAKGGRFPELTEPHL 658 Query: 661 VLSSPSGIQASSGTSTHLASAEHAALTAGSHVSVAAGKSFFASAAEKLSLLAYRLGAKLI 720 VLSSPSGI+ASSG STHLASAEHAALTAGSH+S+AAGKSFFASAAEKLSLLAYRLGAKLI Sbjct: 659 VLSSPSGIEASSGASTHLASAEHAALTAGSHISLAAGKSFFASAAEKLSLLAYRLGAKLI 718 Query: 721 AASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKAKKGIRLNGGGSELVIAEGITGFTQ 780 AASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKAKKGIRLNGGGSELVIAEGITGFTQ Sbjct: 719 AASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKAKKGIRLNGGGSELVIAEGITGFTQ 778 Query: 781 GAHHIHAADHQTLGPQAKPVEFPGARLCPARASGAAQSGSASVALS 826 GAHH+HAADHQTLGPQ +P EFPG+RLCPARASGAAQSGSASV LS Sbjct: 779 GAHHVHAADHQTLGPQGRPAEFPGSRLCPARASGAAQSGSASVVLS 824 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust. Identities = 274/831 (32%), Positives = 418/831 (50%), Gaps = 78/831 (9%) Query: 16 QHNRILQLSFIHDDGPAAALLVNRLEASEALSRDFSYTLELLSDDAGIELHAMMGKLLCV 75 Q RIL+L + GP LL R+ SE L R + YT++L+S IEL ++ + + + Sbjct: 30 QEKRILKLDSVL--GPDV-LLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTL 86 Query: 76 TLTRADGTHRYFTGYVDRFALLRSDGGIAFYEARLAPWLALLAVRRNNRIFHQLSLEGLS 135 L + + GYV L SDG +A ++ +APWL L R++ RI+ + + Sbjct: 87 WLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDIL 146 Query: 136 AELFNDYRTHAHWDCQLRHGDPV--RTEMFQFNESDSNMLHRRWEEAGWHYYYEHQANG- 192 A++F D +A + + P R+ Q+ E+D + + R EE GW+ Y+E + +G Sbjct: 147 ADVF-DQHAYARGNYRFEIVTPALPRSYCTQY-ETDWHFVQRLMEEEGWYAYHEQKPDGS 204 Query: 193 -HQLRLADDSTYAKPIDGTGQIPFQHHGGAIEEDGIAQWSTVRQFQPSSTRLSSY--DFK 249 H L + D++ AKP+ Q+ F G E + I WS R +STRL++ D+K Sbjct: 205 GHVLVITDNTDQAKPL-APEQLAFHGAGTQDEVNRILHWSASRGL--ASTRLATRTDDYK 261 Query: 250 AAQPQ-QVDVPTLNKQGAVV-PVEHYEYTGAYGFSDREDGDRQSRLRIEEFEASAQLFEG 307 + Q Q L + GA+ +E YEY+G Y ++ ++DGDRQ+RLR+E++E+S + F G Sbjct: 262 SPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMG 321 Query: 308 AGNCRLLQPGRSFRLTGHFSKQPTRGHDDGTRDQEFLIVSVEHSATNNYLQDAETPAF-- 365 R L GR F LT H + RG D +D +F++++VE NN F Sbjct: 322 VSGARTLAAGRWFTLTDHPAH---RG--DSKQDSQFMLIAVEWFIENNLPLSGTARDFPG 376 Query: 366 ----------------------------YTNRVRCVRKHIPWHPGRGYYSQPTLLHGIQT 397 NR R+ +P+ R + + QT Sbjct: 377 SLKPQLDAFKASMGRSNDDAGGNARTGHCFNRFEVQRRKLPY---RSPFDHTKPVMHPQT 433 Query: 398 ATVVGPAGENLHVDEYGRVKVQFHWDQIGRNDEHSSAWMRVASSWAGSQQGLVAVPRIGQ 457 A VVGP GE + D+ RVKVQF WD+I DE +S W+RV+ AG G V VPR+GQ Sbjct: 434 AVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQ 493 Query: 458 LVIVQWLGGHPDRPIITGSVVNQRNMPPWELPSQAALSGLRSRELAPQAGNAPGGRSGHV 517 +I+ +L G PDRP+ TG + NQ P W + LSGL+S+E N + Sbjct: 494 ELIISFLNGDPDRPVATGRLFNQEQPPQWH--TDGRLSGLKSKEFGGNGFN-------QL 544 Query: 518 LFDDTHDAIQTQVRSDAFDSQLALGHVTRIERHAGRQEARGEGFELRTDAHGVLRAAKGL 577 + DDT + + S ++QL LG++ + R+ G GF L TD +G + KGL Sbjct: 545 VMDDTTSQNRVHLYSSQSNAQLNLGYLVS-QADNERRNFYGSGFALSTDDYGAVVTQKGL 603 Query: 578 VLTSEPRPKARGHITDMGETVARLTQ----ARGTIESLSKLAQEHQAQDRDADQHDAAQA 633 L+S RP +G D E + + ARG +S S+ E AQD D Sbjct: 604 YLSSYGRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALAQDSLKD------F 657 Query: 634 IEAQNEAIKGEGSAQEGRFPELSEPHLVLSSPSGIQASSGTSTHLASAEHAALTAGSHVS 693 ++A + G+G RF +P L++++P+GI ++ T + SA+ LT+G S Sbjct: 658 VDATEDKYSGQGQGSANRF---KKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTS 714 Query: 694 VAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWIN 753 +A+GKS A+ EK+SL A G KL AA G+VEIQAQ+D ++L+A+KV ++ST + Sbjct: 715 IASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVE 774 Query: 754 LKAKKGIRLNGGGSELVI-AEGITGFTQGAHHIHAADHQTLGPQAKPVEFP 803 + AK + ++ GGS + I + GIT T G A+ H GP ++ P Sbjct: 775 IHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMP 825 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 271/822 (32%), Positives = 411/822 (50%), Gaps = 68/822 (8%) Query: 13 RQRQHNRILQLSFIHDDGPAAALLVNRLEASEALSRDFSYTLELLSDDAGIELHAMMGKL 72 R QH R+LQL GP LL RL A+E L+ + T++LL+ GI L ++ + Sbjct: 15 RITQHRRLLQLD--SSLGPDI-LLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQP 71 Query: 73 LCVTLTRADGTHRYFTGYVDRFALLRSDGGIAFYEARLAPWLALLAVRRNNRIFHQLSLE 132 + + + + DG GYV L SDG + F + L+PWL L R++ RI+ E Sbjct: 72 VTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTE 131 Query: 133 GLSAELFNDY-RTHAHWDCQLRHGDPVRTEMFQFNESDSNMLHRRWEEAGWHYYYEHQAN 191 + A++FN++ + H+ QL R Q+ E+D + + R EE GW ++E + + Sbjct: 132 DILADVFNNHPQARGHYRFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEGWFAHHEQRED 190 Query: 192 G--HQLRLADDSTYAKPIDGTGQIPFQHHGGAI--EEDGIAQWSTVRQFQPSSTRLSSYD 247 G H L + D+ T+ P G Q HG A E D I WS R R S D Sbjct: 191 GSGHVLVITDN-TWNLP--GLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDD 247 Query: 248 FKAAQPQQVDVPTLNKQGAVVP--VEHYEYTGAYGFSDREDGDRQSRLRIEEFEASAQLF 305 +K+ ++ + + +P +E YEYTGAY F +E G+RQ+ L++E++E+S Q + Sbjct: 248 YKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRY 307 Query: 306 EGAGNCRLLQPGRSFRLTGHFSKQPTRGHDDGTRDQEFLIVSVEHSATNNY--------- 356 R L GR FRL H R D R+++F+I++++ NN Sbjct: 308 SAVSGVRNLACGRWFRLEEHPQH---RAEPD--RERQFVILAIDWFVENNLPLSHQALDF 362 Query: 357 ------------------LQDAETPAFYT----NRVRCVRKHIPWHPGRGYYSQPTLLHG 394 Q AET +T NR R+ +P+ P R + ++P +L Sbjct: 363 PGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAH-ARPVMLP- 420 Query: 395 IQTATVVGPAGENLHVDEYGRVKVQFHWDQIGRNDEHSSAWMRVASSWAGSQQGLVAVPR 454 QTA VVGPA E ++ D R+KVQF WD+I +E +S W+RV+ AG G + VPR Sbjct: 421 -QTAIVVGPASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPR 479 Query: 455 IGQLVIVQWLGGHPDRPIITGSVVNQRNMPPWELPSQAALSGLRSRELAPQAGNAPGGRS 514 IGQ VIV +L G PDRP++TG + N P W + LSG++S+E N Sbjct: 480 IGQEVIVSFLNGDPDRPVVTGRLFNAEQRPQWH--TNGRLSGVKSKEFGGTGFN------ 531 Query: 515 GHVLFDDTHDAIQTQVRSDAFDSQLALGHVTRIERHAGRQEARGEGFELRTDAHGVLRAA 574 ++ DDT + + + S +QL LGH+ + R+ G GF L TDA+G + Sbjct: 532 -QMVMDDTPEQNRIHLYSTNTHAQLNLGHLVS-QTGNERRSFFGSGFALSTDAYGAIVTH 589 Query: 575 KGLVLTSEPRPKARGHITDMGETVARLTQARGTIESLSKLAQEHQAQDRDADQHDAAQAI 634 KGL +++ RP A+G D E +L +LS+ A + A+ A Q I Sbjct: 590 KGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAKAGAEPL-AGQEALRDFI 648 Query: 635 EAQNEAIKGEGSAQEGRFPELSEPHLVLSSPSGIQASSGTSTHLASAEHAALTAGSHVSV 694 +A + AQ RF + L+ +SP GI ++ H + L++G+ S+ Sbjct: 649 DATQADYEDPSQAQANRF---QQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSI 705 Query: 695 AAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWINL 754 A GKS AS AEK+SL A++ G KL +A G+VE+QAQ+D +EL+A+KV ++S + + Sbjct: 706 AVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEI 765 Query: 755 KAKKGIRLNGGGSELVI-AEGITGFTQGAHHIHAADHQTLGP 795 +AK+ + + GGS + + A GIT T GA A H GP Sbjct: 766 RAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGP 807 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 238/854 (27%), Positives = 383/854 (44%), Gaps = 114/854 (13%) Query: 34 ALLVNRLEASEALSRDFSYTLELLSDDAGIELHAMMGKLLCVTLTRADGTHRYFTGYVDR 93 ALLV + E+L Y L L+ + L + + + L G R G++ Sbjct: 34 ALLVMHVTGRESLCGAMEYELLCLTSREDLALEDFVALPVEIQLVTDLGLLRTVCGFIAE 93 Query: 94 FALLRSDGGIAFYEARLAPWLALLAVRRNNRIFHQLSLEGLSAELFNDYRTHA------- 146 + D + Y L L+L+ R N R+F + S ++ L +++R + Sbjct: 94 AHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLRASEADVTQALVSEWRQRSPLMASSF 153 Query: 147 --HWDCQLRHGDPVRTEMFQFNESDSNMLHRRWEEAGWHYYYE-------HQANG--HQL 195 W L P R + Q NESD++ L R W+ G ++ HQA H L Sbjct: 154 EVDWSL-LAERFPAREFIMQHNESDADFLRRLWKRRGISWFIRPGEPPLPHQAGSPRHTL 212 Query: 196 RLADDSTYAKPIDGTGQIPFQHHGGAIEEDGIAQWSTVRQFQPSSTRLSSYDFKAAQPQQ 255 L DD+ P + G + ++ EEDGI +W R+ + S ++D P + Sbjct: 213 VLFDDAVQL-PRNAAGAVSYRQDHAPAEEDGIVRWLGTRRLRAGSVSRHAWDHAQDGPMR 271 Query: 256 VDVPTLNKQGAVVP-----VEHYEYTGAYGFSDREDGDRQSRLRIEEFEASAQLFEGAGN 310 V T+ +QG + ++ Y + DRED + + R++ F+ Sbjct: 272 SQVNTVAEQGELGDHFARLLDDYFIEAPHIADDREDFHQIATARMQRLAQETAEFQADST 331 Query: 311 CRLLQPGRSFRLTGHFSKQPTRGHDDGTRDQEFLIVSVEHSATNNYLQDAETPAFYTNRV 370 R L+ G + H H+ +EF+I +E A NN+ PA V Sbjct: 332 IRALRVGEWIGVKDHPELDRRAAHE-----REFVITRLEVYAENNF------PASLDEHV 380 Query: 371 RCVRKH--------IPWH-----PGRGYYSQPTLLHG------------------IQTAT 399 R V +H P GR Y ++ T + +Q A Sbjct: 381 RLVARHHDSSLEDLAPLRRRCLAQGRRYLNRFTCVRRGTPLVAAFDPRVDLPAVRVQNAH 440 Query: 400 VVGPAGENLHVDEYGRVKVQFHWDQI----------GRNDEHSSAWMRVASSWAGSQQGL 449 VVGPAGE L+ D GR+K++FH ++ E SAW+RVAS WAG Q G Sbjct: 441 VVGPAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASGSERDSAWVRVASHWAGRQWGA 500 Query: 450 VAVPRIGQLVIVQWLGGHPDRPIITGSVVNQRNMPP-----WELPSQAALSGLRSRELAP 504 +++PR+G V+V +LGG PD+PI+ G V N +++PP LP L+G++S+E+ Sbjct: 501 ISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFSRVGSLPGNRFLAGIKSKEIQ- 559 Query: 505 QAGNAPGGRSGHVLFDDTHDAIQTQVRSDAFDSQLALGHVTRIERHAGRQEARGEGFELR 564 G R + DDT I Q+ S S+L LG +T R GR +ARGEG ELR Sbjct: 560 ------GQRYNQLRLDDTPQQISAQLASQHGQSELNLGWLTH-PRAGGRSDARGEGAELR 612 Query: 565 TDAHGVLRAAKGLVLTSEPRPKARGHITDMGETVARLTQARGTIESLSKLAQEHQAQD-- 622 TD LR +G+++++ R +A G D E + L + + L+ LAQ H A D Sbjct: 613 TDQALALRGGQGVLISAVMRQEASGTQLDRAEMLGLLHVLQDVQQQLATLAQTHHADDTQ 672 Query: 623 -----RDADQHDAAQAIEAQNEAIKGEGSAQEGRFPELSEPHLVLSSPSGIQASSGTSTH 677 R DQ DA +A N K +G + P + +++P+G+ +S Sbjct: 673 LQTFSRLRDQLDAWEA--GSNTQAKSDGGGK---------PMVAVTAPAGVAITSDEGVA 721 Query: 678 LASAEHAALTAGSHVSVAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMEL 737 L + + L + + +AGK A AE + L A RLG +L+AA+G++++Q +E+ Sbjct: 722 LGAQKEIDLISVGNTQFSAGKKLLARVAESICLFAQRLGIQLVAANGKLQLQTHGGDVEV 781 Query: 738 LAQKVVDIISTRDWINLKAKKGIRLNGGGSELVIAEG-ITGFTQGAHHIHAAD-HQTLGP 795 + + + +++ D I L+A + +RL G+++ + G IT + G H I + + H G Sbjct: 782 TSARRI-VLTAADEIVLQAPR-LRLQAQGAQIDLGGGVITQQSSGDHVIRSGNFHHVSGA 839 Query: 796 QAKP--VEFPGARL 807 ++P VE P + + Sbjct: 840 DSQPPGVELPASTM 853 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 246/836 (29%), Positives = 382/836 (45%), Gaps = 101/836 (12%) Query: 34 ALLVNRLEASEALSRDFSYTLELLSDDAGIELHAMMGKLLCVTLTRADGTHRYFTGYVDR 93 +LL+ R++ E L L +S D + LH ++G+ L V + G + G + Sbjct: 38 SLLLQRVDIQETLLEGMQVQLTCVSTDPDLPLHTLLGQPLGVEMVTDRGRLHHTNGLITD 97 Query: 94 FALLRSDGGIAFYEARLAPWLALLAVRRNNRIFHQLSLEGLSAELFNDYRTH-----AHW 148 +DG + Y+ + L+++ R N RIF +LS+ + L +++R A + Sbjct: 98 ACAGHADGALRVYQLTMRDALSIMEGRVNTRIFRRLSVPSILEILLSEWRQRSSTLAAAF 157 Query: 149 DCQLRHGD----PVRTEMFQFNESDSNMLHR--RWEEAGWHYYYEHQANG---------- 192 L D P R QFNESD++ + R R E W+ QA+ Sbjct: 158 KFDLDGLDDTRYPAREISHQFNESDAHFIRRLCRREGIAWYVASGQQADETAIATHADIP 217 Query: 193 -HQLRLADDSTYAKPIDGTGQIPFQHHGGAIEEDGIAQWSTVRQFQPSSTRLSSYDFKAA 251 H L D P G + + G E D I+ WS R P S S+D+KA Sbjct: 218 IHTLVFCDQPALL-PRAAAGTVRYHRDGATEERDAISAWSRQRSLVPGSVWRRSWDYKAV 276 Query: 252 QPQQVDVPTLNKQG-AVVPVEHYEYTG----AYGFSDREDGDRQSRLRIEEFEASAQLFE 306 + ++ ++ QG A + + G + + D R + R+ EA ++ F+ Sbjct: 277 RAEEASSHSIVDQGDAGYKLANILRDGLIEAPHAADSQNDHLRLADTRMLAHEARSESFD 336 Query: 307 GAGNCRLLQPGRSFRLTGHFSKQPTRGHDDGTRDQEFLIVSVEHSATNNY---LQDA--- 360 +G R L G F L GH RG R EFL+ S++ A NN+ LQDA Sbjct: 337 ASGTVRDLAVGHWFLLDGH---PDMRGQKPAQR--EFLVTSLQQQAENNFPTVLQDAIRR 391 Query: 361 ETPAF-------------YTNRVRCVRKHIPWHPGRGYYSQPTLLHGIQTATVVGPAGEN 407 PA Y N++ C R+ P P +H I TA VVGP+ E Sbjct: 392 LAPASPWKNLAHSAADLRYRNQLTCRRRTAPLAPHYDPRLHLPPVHPI-TALVVGPSKEE 450 Query: 408 LHVDEYGRVKVQF---------HWDQIGRND-EHSSAWMRVASSWAGSQQGLVAVPRIGQ 457 ++ DE GR+KVQ H G + E SA++RV+S+WAG+ G AVPR+G Sbjct: 451 VYCDELGRIKVQLQGLHPEDHAHAQGAGASGHEQDSAFVRVSSAWAGAGYGHDAVPRVGM 510 Query: 458 LVIVQWLGGHPDRPIITGSVVNQRNMP-----PWELPSQAALSGLRSRELAPQAGNAPGG 512 V++ +LGG PD+ + G + N N+P LP LSG++++E+ G Sbjct: 511 EVLIDFLGGDPDKMFVAGVLHNGINLPARFSHSGSLPGNRFLSGIKTKEIG-------GA 563 Query: 513 RSGHVLFDDTHDAIQTQVRSDAFDSQLALGHVTRIERHAGRQEARGEGFELRTDAHGVLR 572 R + DD+ I TQ+ S+ SQL LG++T RH GR E RGEG E RTD HGV+R Sbjct: 564 RYNQLRLDDSPGQISTQLASEHQHSQLNLGYLTE-PRHGGRGEDRGEGLEARTDGHGVMR 622 Query: 573 AAKGLVLTSEPRPKARGHITDMGETVARLTQARGTIESLSKLAQEHQAQDRDADQHDAAQ 632 AAKG+++T++ + + RG R+ + +E+L L + Q DA +H A Sbjct: 623 AAKGVMITAQSQDRGRG----------RMLERAALLETLDNLQELAQRLSHDAARHHAEA 672 Query: 633 AIEAQNEAIKGE------GSAQEGRFPELSEPHLVLSSPSGIQASSGTSTHLASAEHAAL 686 AQ E I+ + G G P + + +P+G+ +S + L +A+H L Sbjct: 673 TDVAQLERIRAQLRAWDAGDVANGAV-RAETPMVAVDAPAGVSITSQDTMVLGAAQHIDL 731 Query: 687 TAGSHVSVAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVV--- 743 + ++ ++AG+ A E LS A + KLI+ G ++IQA + ++L A + + Sbjct: 732 VSRANTQLSAGRRLLMRAGEMLSAFAAK-HMKLISGKGSIKIQAHEEHIDLSAARRILLE 790 Query: 744 ---DIISTRDWINLKAKKGIRLNGGGS-ELVIAEGITGFTQGAHHIHAADHQTLGP 795 +II I++++++ + GGGS A I T G AA H LGP Sbjct: 791 ASEEIILQAPKISIRSRETTEVAGGGSFSRWNASAIEHGTSGEWRQQAAMHHVLGP 846 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,693,820 Number of extensions: 118002 Number of successful extensions: 395 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 15 Length of query: 826 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 733 Effective length of database: 1,179,515 Effective search space: 864584495 Effective search space used: 864584495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)