BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3358.p (415 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 644 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 333 2e-92 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 324 8e-90 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 320 1e-88 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 313 1e-86 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/415 (81%), Positives = 356/415 (85%), Gaps = 9/415 (2%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MADI CQ L+KHYAGGPPVLHPLDL I DG+FVVLLGPSGCGKSTMLRMIAGLE+ISGGT Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 L IGG VVNDLPARERNVAMVFQNYALYPHM+VYDNIAFGLRRLKRPAAEIDRRVREVAA Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +LNLE LLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRLRTTTVYVTHDQLEAMTLADRV+LMQ G IVQAGSPAELYRYPR LFAAGFIGTPAM Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 241 NFLSGVVERHGQQVAVRCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDYVRLA 300 NFLSG V+R Q+ + Q+ W L ERFSRL +AVKLAVRPD+VR+A Sbjct: 241 NFLSGTVQRQDGQLFIETAHQR---------WALTGERFSRLRHAMAVKLAVRPDHVRIA 291 Query: 301 REQDDNRSLTSDVSVELVEILGADALLTCRHGDETLTALLPAQRLPQAGAALRLAFDEQE 360 E++ SLT VSVELVEILGADALLT R GD+TLTAL+PA RLPQ GA L LA D+ E Sbjct: 292 GEREPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHE 351 Query: 361 LHVFDVKSGENLSLPAGALAPSWPDDDPHSKETKHEPGSGAGPYPPGRIVQGLGA 415 LHVFDV+SGENLSLP AL DD PH KETKHE GSGAGPYPPG IVQGLGA Sbjct: 352 LHVFDVESGENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA 406 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 174/373 (46%), Positives = 241/373 (64%), Gaps = 14/373 (3%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA + + + K + G ++ +D+ I DG+F VL+GPSGCGKST+LRM+AGLEEI+GG Sbjct: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 + IGG VVN++ ++R++AMVFQNYALYPHM V DN+AF L K+ A +D RV++ A Sbjct: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L L LL+R PR +SGGQ+QR A+ RAI++ P VFLFDEPLSNLDAKLR Q+R +IK L Sbjct: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRL+TT++YVTHDQ+EAMT+AD++V+M+ G + Q G P +LY YP LF AGFIG+PAM Sbjct: 180 HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAM 239 Query: 241 NFLSGVVERHGQQVAVRCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDYVRLA 300 NF+ + R+ V R L DG V VRP+++ + Sbjct: 240 NFIPATLRRNATGAEVEFAD--GTRVPAPYGAALQGN------DGQKVTYGVRPEHLSIG 291 Query: 301 REQDDNRSLTSDVSVELVEILGADALLTCRHGDETLTALLPAQRLPQAGAALRLAFDEQE 360 + + + V V VE GAD + R GD +LT++ + AG + L D Sbjct: 292 AA---GQGIATKVIV--VEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSR 346 Query: 361 LHVFDVKSGENLS 373 H+FD +SG++L+ Sbjct: 347 THLFDAESGKSLA 359 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 324 bits (831), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 178/372 (47%), Positives = 235/372 (63%), Gaps = 17/372 (4%) Query: 1 MADILCQGLSKHYAGGPP---VLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEIS 57 MA I + + K Y G V+H +D +I DG+F+V++GPSGCGKST+LRM+AGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 58 GGTLSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVRE 117 G + IG +VVNDL +ER++AMVFQNYALYPHM VY N+A+GL+ +EID RV+ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 118 VAAMLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 AA+L L LLER PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGT 237 ++LH LRTT++YVTHDQ+EAMTL R+++M G Q G+PAE+Y P T F A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 238 PAMNFLSGVVERHGQQVAV-RCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDY 296 P MN L G + G V + + R Q ER L VRP++ Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERI----------LGVRPEH 290 Query: 297 VRLAREQDDNRSLTSDVSVELVEILGADALLTCRHGDETLTALLPAQRLPQAGAALRLAF 356 + D + + VELVE LGA+ L+ R G + L PA + G + +F Sbjct: 291 LLPIL---DGSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASF 347 Query: 357 DEQELHVFDVKS 368 ++H FDVKS Sbjct: 348 GAGDVHWFDVKS 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 320 bits (820), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 179/369 (48%), Positives = 228/369 (61%), Gaps = 13/369 (3%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA + + L K Y G VL L+L I DG+F VL+GPSGCGKST+LRM+ GLEEISGG Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 L+IGG+VVN LP ER +AMVFQ+YALYPHMNVY N+AFGL+ ++ID R+R AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L ++ LL+R PR +SGGQ+QR AI RAI++ P +FLFDEPLSNLDA LR Q R +I +L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 H++L T VYVTHDQ+EAMTL D++V+M G I QAG+P ELY+ P+ LF AGFIG+P M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 241 NFLSGVVERHGQQVAVRCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDYVRLA 300 NF GVV RC Q +L D + G AV L +R + +R Sbjct: 241 NFFQGVV--------TRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIR-- 290 Query: 301 REQDDNRSLTSDVSVELVEILG-ADALLTCRHGDETLTALLPAQRLPQAGAALRLAFDEQ 359 D + L V LVE LG A+ L G + R G + L+ Sbjct: 291 EGLGDGQPLHG--VVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSH 348 Query: 360 ELHVFDVKS 368 H+FD + Sbjct: 349 AFHLFDAQG 357 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 313 bits (803), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 173/366 (47%), Positives = 238/366 (65%), Gaps = 16/366 (4%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA + + L+K Y V+ ++L+I+DG+FVV +GPSGCGKST+LRMIAGLEEIS G Sbjct: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 L IG + +N++PA +R VAMVFQ+YALYPHM++YDN+AFGL+ + AEID V+ A Sbjct: 60 LDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L+++ LL+RKPRA+SGGQ+QR AI RAI + PSVFLFDEPLSNLDA LR ++R + +L Sbjct: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 H L+TT +YVTHDQ+EAMTLAD++V++ G I Q GSP +LY +P F AGFIG+P M Sbjct: 180 HDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKM 239 Query: 241 NFLSGVVERHGQQVAVRCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDYVRLA 300 NF+ G V A++ Q Q W D S L G V L VRP+++ +A Sbjct: 240 NFIDGTV------AAIQADGVQVQLPGGGLQWAAVDG--STLQVGQKVTLGVRPEHLNIA 291 Query: 301 REQDDNRSLTSDVSVELVEILGADALLTCRH--GDETLTALLPAQRLPQAGAALRLAFDE 358 + Q +L + + +E+LG + L + ++ L +P G+ L LA D Sbjct: 292 QGQ---AALQARCTA--LELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADP 346 Query: 359 QELHVF 364 H+F Sbjct: 347 ARCHLF 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,355,766 Number of extensions: 58083 Number of successful extensions: 592 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 398 Number of HSP's successfully gapped: 146 Length of query: 415 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 327 Effective length of database: 1,203,190 Effective search space: 393443130 Effective search space used: 393443130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)