BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3349.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 553 e-159 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 286 2e-78 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 202 2e-53 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 179 2e-46 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 177 8e-46 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 553 bits (1424), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/275 (97%), Positives = 272/275 (98%) Query: 1 MNAINQHAFTPASEAAQATPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP 60 MNAINQHAFTPA +AAQ TPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP Sbjct: 1 MNAINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP 60 Query: 61 TGCGKSTTLSLITGLLKPTLGEVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGP 120 TGCGKSTTLSLITGLLKPTLGEVRVMGQ V+GIDPRIGFVFQNDAVFPWRSVR+NVAAGP Sbjct: 61 TGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGP 120 Query: 121 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP 180 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP Sbjct: 121 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP 180 Query: 181 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI 240 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI Sbjct: 181 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI 240 Query: 241 DLPRPRVMEEVRYEQRFIDLSRRIWADLREEVHIA 275 DLPRPRVMEEVRYEQRFID+SRRIWADLREEVHIA Sbjct: 241 DLPRPRVMEEVRYEQRFIDISRRIWADLREEVHIA 275 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 286 bits (731), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/257 (53%), Positives = 189/257 (73%), Gaps = 3/257 (1%) Query: 19 TPAIELRNVSCRFITADGRAT--VALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 TPA++ N++C F++ D R+ A+ + +++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 2 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 Query: 77 KPTLGEVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADE 136 +P+ G V+V G+ + GI+ R G++FQ +A+ PWRS NV AG +RG + A L ++ Sbjct: 62 QPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQ 121 Query: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 W+ RVGL FGD YPHQLSGGMRKRVALAQT I P+I+LMDEPFSALD+QTR LM++E+ Sbjct: 122 WLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEV 181 Query: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLK-SVYPIDLPRPRVMEEVRYEQ 255 L LW+A +V+F+THDL+EAIA++D+V VL A P T + IDLPRPR + E+R Sbjct: 182 LDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHP 241 Query: 256 RFIDLSRRIWADLREEV 272 RF++L ++IW LR+EV Sbjct: 242 RFVELHQQIWDVLRDEV 258 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/230 (45%), Positives = 144/230 (62%), Gaps = 1/230 (0%) Query: 17 QATPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 A+P I ++ V F T D R VAL+D ++ + G+FV ++GP+GCGKST L+ I G Sbjct: 5 NASPRIRIQGVHKVFKT-DDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFA 63 Query: 77 KPTLGEVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADE 136 P+ G++ +VV P G VFQ A+FPW +V NVA G +G PKA+ H + Sbjct: 64 LPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQ 123 Query: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 + ++GL F +P LSGGMR+RVA+A+ I+LMDEPF ALD TR +QDEL Sbjct: 124 LLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDEL 183 Query: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPR 246 LR+W ++VFVTH +EEAI LAD++ V+T RP T+K ++LPR R Sbjct: 184 LRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLR 233 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 124/193 (64%) Query: 42 LRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQVVDGIDPRIGFVF 101 + +F+ +A GE VA+VGP+GCGKST L + GL KP+ G V GQ + G P +F Sbjct: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 Query: 102 QNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKR 161 Q +A++PW +++ NVA F+ K +A A W+ V L F +YPHQ+SGGMR+R Sbjct: 78 QENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQR 137 Query: 162 VALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALA 221 ALA+ FI+ P+ LL+DEPF ALD TR +QD L L +VV VTHD++EA+ LA Sbjct: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLA 197 Query: 222 DKVYVLTARPATL 234 D+++V + RPA + Sbjct: 198 DRIFVFSPRPAKV 210 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 177 bits (449), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 145/256 (56%), Gaps = 12/256 (4%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 +++ N S F D + AL S+ + G FV +G +GCGKST L+ + G L + G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 82 EVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIRRV 141 + + GQ V G G VFQ D++ PW+SV+DNVA G F G K+ + A E +R V Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 GL F P++LSGGMR+RV LA+ +P+ILLMDEPF ALD TR MQ+ L+ +W+ Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWA 181 Query: 202 AHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRY----EQRF 257 V F+TH +EEA+ L +V V++ RP + + + D R R+ E R Sbjct: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVR-------RFAAGCEARA 234 Query: 258 IDLSRRIWADLREEVH 273 I + +A+LREE+ Sbjct: 235 IK-TEPAFAELREEIR 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 886,181 Number of extensions: 36796 Number of successful extensions: 511 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 138 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)